Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc23g00027 ATGCCGACCACCGCCAACACGCCGCGGCGGCCAACCATTACCCTGCCGCCGCGTCCCAGCCTCGAGACGTTCCTTTCGTCGGCCGGAATAATAAGCCCCGGTCCCATGACTCTCGTCTCCTCCTTCTTTGCCGACGACTACTACTCCTCCCTTTCACCTTCACGTTCACCTTCACCTTCCTTCACTCAGCTCCTCGCCGCCGCCAATACCAACAGTAGCTCCTCGCCTTTCTTCACTGTGCCACCTGGTTTCAGCCCCTCCGCCTTCCTCTTCTCCCCTCACCCTCCTCAGAGCCCTTTTGGGATTTCACACCAGCAGGCATTAGCACAGGTTACAGCTCAAGCTGTGGTATCACAATTAGAGGGCCAAATGCAGATTGAAGAAGAAGCTTCTAATGATGATGCTTCAGAGAAGAAAGTTGCAGTGGCAGTATCAGTATCTGTATCAGATAACAAGAAATTATTCCAACAGCCTTGTGATGATGGCTATAACTGGAGAAAATATGGACAGAAGCAGGTTAAAGGGAGTGAGTTTCCAAGAAGCTATTACAAGTGTACAAATCTGAGTTGCCTTGTGAAGAAAAAAGTTGAACGTGCCTGTGATGGTCACATAACAGAAATCATCTATAAGGGGCAGCATAACCATGAAAAGCCTCTGCCAAATAATAAGCGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAGTATTGATTATTCAACTGAGTTGAAATCAGATAGTTTTGGCAAAAGCTTTTCTGATTGTGAGAGCTATGATTTGGGTGCTCTAGATATGAGGGAAGAAGAGGTGGCAGATGATGACATTATTGAACCTAACCCCAAGAGAAGGAACATTGATGTTGGGGTTTGTGAGGTACATAAAACTACTGTGACAGAACCCAAAATAATTGTCCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGCTATAAGTGGCGCAAGTATGGCCAGAAAGTCGTCAAGGGTAATCCTCATCCTAGGAGCTACTACAAATGCACAAGTGCAGGGTGCAACGTGAGAAAGCACGTGGAGAGAGCTTCAATGGATCCAAAAGCAGTCATAACAACTTATGAGGGAAAACATAACCATGATGTGCCTTCTTCCAGAAAGAGTAGCCACAATAACACTTGTTCAAATTCAAAGCTACATAATAAAATGGTGCCGCCGGAGAAGCTTCCGGTGGCCGGAGATCTGGATTTCGGAAACAGCAACCAAAGACCGATACATTTAAGATTGAAAGAAGAGCATATCATAGCATGA 1326 0.4329 MPTTANTPRRPTITLPPRPSLETFLSSAGIISPGPMTLVSSFFADDYYSSLSPSRSPSPSFTQLLAAANTNSSSSPFFTVPPGFSPSAFLFSPHPPQSPFGISHQQALAQVTAQAVVSQLEGQMQIEEEASNDDASEKKVAVAVSVSVSDNKKLFQQPCDDGYNWRKYGQKQVKGSEFPRSYYKCTNLSCLVKKKVERACDGHITEIIYKGQHNHEKPLPNNKRNNNNNNNNNNNNNNNNNNNNNNNNNNSIDYSTELKSDSFGKSFSDCESYDLGALDMREEEVADDDIIEPNPKRRNIDVGVCEVHKTTVTEPKIIVQTRSEVDLLDDGYKWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASMDPKAVITTYEGKHNHDVPSSRKSSHNNTCSNSKLHNKMVPPEKLPVAGDLDFGNSNQRPIHLRLKEEHIIA 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc23g00027 441 MobiDBLite consensus disorder prediction 391 405 - -
Stsc23g00027 441 ProSiteProfiles WRKY domain profile. 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 ProSiteProfiles WRKY domain profile. 323 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 FunFam WRKY transcription factor 33 315 381 - -
Stsc23g00027 441 MobiDBLite consensus disorder prediction 221 257 - -
Stsc23g00027 441 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 MobiDBLite consensus disorder prediction 382 411 - -
Stsc23g00027 441 Gene3D WRKY domain 313 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 Gene3D WRKY domain 143 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 SMART WRKY_cls 328 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 SMART WRKY_cls 159 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 100 403 IPR044810 GO:0003700
Stsc23g00027 441 FunFam WRKY transcription factor 148 219 - -
Stsc23g00027 441 SUPERFAMILY WRKY DNA-binding domain 157 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc23g00027 441 MobiDBLite consensus disorder prediction 211 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc23g00027 Stsc-Chr23 190498 193670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc23g00027 10 439 WRKY Transcription Factor Family AT2G03340 43.883 5.02e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc23g00027 WRKY 2.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc23g00027 - - aip:107622739 525.783