Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc23g00025 ATGGCAAGGAAGAGAAAGAACTGTGAAGCAGTGGAAGATGGAAACATAATTGAGGGAAGTATGGGGTGGGAGGAGATGGTGAAGCAAGCCGCCGAGCTTGGGGGAGCTCGGAGGGCTAGAAAGCGCTATGTAGGCGTCCGGCAGAGGCCGTCCGGAAGATGGGTGGCCGAGATTAAGGACACCATCCAGAAGATAAGAGTGTGGCTTGGAACATTCGATACGGCCGAGGAAGCCGCCAGAGCTTATGACGAGGCGGCTTGCCTTCTTCGAGGGGCTAACACAAGAACAAACTTCTGGCCTTGTTCTCAATCCTCCACAAGCCCTGCTCTTTCTTCAAAGATCACAAATTTGCTCCTTCAAAGGCTTAAGGAAAGGAACAACACTTGTCCTGCTTCTTCAGCTTCAATTTCTTCTTCTTCTTCTTCGTCGTCTTCTCTTTCAAATTCTCTTCTCATCAATCAAGAGATGCAACAATTGGAGGCATGTGGAGGCACTAATTCAGCAGAATTCTCAATTGATCAGTTCAATGATCTCCTTAATGAGGAAGATTACGGCGCAAGTAACAGCGATTTTGTCAACAACACTGCAAGGATTGATTACATCACAAGCAGCTTTGAGTCTTGCTTGACTGAGAATGACTATGAGGACAAGAAGGGGGCCGAAACTGACACGGATTACAAGCCGGCCAGCGACGAGGACAGCGAGGGAGAAAGCTCGGATTTCGGCCTACAAAGCTATGCAGATTTCGGGTTTCTGGACAACATTTCGCCGCCGGCGAGCAGCTACTATTGGCCATTTGAGATGGCTCAAGAGATGGATGAAGGTGTGGAAGCAGAGAACTATGGCATACCTGAGTGCTTGAAGAGAATGAAGTATGAGAGGAAGATCTCAGCTTCACTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCAGGGAACAAAAAGGGTAGAACAGGAATTTCCATAGCTGATCAGTTGACAAGCCTTCAAATGGCTTGTAACAAAAACAAACAAGAGAAGAAGAATGATGAGGACAAACAACACAAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAAATGTTCATCATCCAATGCCAATTGACATGAGTTCATCATCATCATCAAGTGTTGTTGATGCAGAGCTCTTGTTTTGGAGCTCACTAGATCTTTCACCTATTTACACAAAATCTTTCCCTTATTTGAATTGTTAA 1227 0.4531 MARKRKNCEAVEDGNIIEGSMGWEEMVKQAAELGGARRARKRYVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNNTCPASSASISSSSSSSSSLSNSLLINQEMQQLEACGGTNSAEFSIDQFNDLLNEEDYGASNSDFVNNTARIDYITSSFESCLTENDYEDKKGAETDTDYKPASDEDSEGESSDFGLQSYADFGFLDNISPPASSYYWPFEMAQEMDEGVEAENYGIPECLKRMKYERKISASLYAFNGIPECLKLKLESGNKKGRTGISIADQLTSLQMACNKNKQEKKNDEDKQHKEEEEEEEEEENVHHPMPIDMSSSSSSSVVDAELLFWSSLDLSPIYTKSFPYLNC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc23g00025 408 MobiDBLite consensus disorder prediction 214 240 - -
Stsc23g00025 408 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Stsc23g00025 408 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 295 - -
Stsc23g00025 408 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Stsc23g00025 408 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Stsc23g00025 408 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Stsc23g00025 408 MobiDBLite consensus disorder prediction 340 378 - -
Stsc23g00025 408 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Stsc23g00025 408 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Stsc23g00025 408 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Stsc23g00025 408 Coils Coil 339 366 - -
Stsc23g00025 408 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Stsc23g00025 408 MobiDBLite consensus disorder prediction 214 234 - -
Stsc23g00025 408 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc23g00025 Stsc-Chr23 165516 166762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc23g00025 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 2.83e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc23g00025 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc23g00025 K09286 - gmx:100786711 430.254