Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc23g00019 ATGGAGGCTTTGCCTTCGATTATAACGGTATCACAGGACGGAAAAGGACACTACCGGACGGTGCAGGAGGCAATCGATGCGGTGCCTCTAGGCAACACTCGCCGGACGGTGATCCGGGTGGCCGCAGGGATCTACAAGCAGCCTGTTTATGTGGCCAAGACAAAGAGGTTCATCACCATTGCTGGCATTTCCCCTGAGAACACTGTTCTAACATGGTACAACACTGCCACAAGAATCCAACACCACAAAGGTGAAAAGGAGATAGGAGGAGGGACTTTTGGTAGTGCAAGCACCATTGTAGAAGGTGATGACTTCATTGCTGAGAATATTACCTTCGAGAATTCTTCCCCTCAGGGTTCAGGACAAGCAGTGGCTTTCAGAGTAACAGCTGATCGATGTGCTTTCTATAGTTGCAGGTTTCTTGGATGGCAGGACACACTGTATTTACACTATGGGAAACAATATTTAAGAGATTGCTACATAGAAGGAAGTGTGGACTTCATATTTGGGAATGGCACTGCTATGTTGGAGCATTGTCACATACACTGCAAATCTCAAGGGTTCATAACTGCACAGAGCAGAAAATCTGCAGAGGAAACAACTGGTTTTGTGTTCCTGAGGTGTGTTATCACAGGTAATGGAGGAAGGGAATATGCATATCTTGGAAGACCATGGGGACCCTTTGGAAGAGTTATCTTTGCATTCACTTATATGGATCAATGTGTTCAACTTGCTGGTTGGAATAATTGGGGTAAACCTGACAATGAGAAAACTGCTTCCTTTTTTGAATACAGGTGTTTTGGACCAGGTTACTGCCCATCAAAAAGAGTGAAATGGGCCAAACATTTAGGAGACAAAGAAGCAGAGCAGTTCTTGCTTCATGGCTTCATTGAACAACCAAACAAACCTTGGCTTTCTCAAAGAATGGCCTTCAAGGTTCCATATTCTGCTTAG 954 0.4486 MEALPSIITVSQDGKGHYRTVQEAIDAVPLGNTRRTVIRVAAGIYKQPVYVAKTKRFITIAGISPENTVLTWYNTATRIQHHKGEKEIGGGTFGSASTIVEGDDFIAENITFENSSPQGSGQAVAFRVTADRCAFYSCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNGTAMLEHCHIHCKSQGFITAQSRKSAEETTGFVFLRCVITGNGGREYAYLGRPWGPFGRVIFAFTYMDQCVQLAGWNNWGKPDNEKTASFFEYRCFGPGYCPSKRVKWAKHLGDKEAEQFLLHGFIEQPNKPWLSQRMAFKVPYSA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc23g00019 317 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 305 - -
Stsc23g00019 317 Pfam Pectinesterase 8 298 IPR000070 GO:0030599|GO:0042545
Stsc23g00019 317 Gene3D - 4 313 IPR012334 -
Stsc23g00019 317 ProSitePatterns Pectinesterase signature 2. 161 170 IPR033131 -
Stsc23g00019 317 SUPERFAMILY Pectin lyase-like 4 299 IPR011050 -
Stsc23g00019 317 FunFam Pectinesterase 4 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc23g00019 Stsc-Chr23 133224 136227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc23g00019 2 298 Carbohydrate Esterase AT1G69940 39.474 6.57e-71 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc23g00019 K01051 - tcc:18601567 530.791