Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc23g00010 ATGAGTGAAGAGATGAAAAAGTTTGAACTACCACCAGGTTTCAGGTTTCATCCAACAGATGAAGAGCTCATAACTCACTACCTCACTCAGAAGGTTCTTCAACATGATGATGAAAACTGCTTCTATGCCACAGCCATTATTGGAGAGGCTGATTTCAACAAGTGTGAGCCTTGGGATTTGCCTTGGAAGGGGAAAATGGGTGAGAAAGAATGGTATTTTTTCTGTTTGAAAGACAAAAAGTACCCAACAGGTTTAAGGACAAACAGAGCCACTGGTGCTGGGTATTGGAAGGCCACAGGTAAAGACAAAGAGATATACAATGCAGAAGCACTTATTATTGGGATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCTCCAAATGGTGAAAAGACAAATTGGGTCATGCATGAATATAGATTGGAAGGTCATCATAAACATTCTATGTACAATCTACCCAAGACAACCAAGAAAGAGTGGGCTCTATGCAGAGTTCTACACAAAAGTGAAAAGAAAATGAATGTTCCACAATTGATGGATCCTTCGCAAGTAACACTGTTTTCAGACCCAAACAATAATCAAAGTGATGATCCAAATCCAATGACACATGAAGAAGATAATGATGACATAATAGTTGATAGCTTTGAAACTCCTCCTTTCTTGGAACAACCTTATTCTTCATCATCATATGATTCTTCTAACTTAGACACCCTTAACCTTAATCATGCCACATGGGATTTTACCAAAAATGCCCCTAATAGTAATGTGTCCAATCATTCCACACAAATTGGACAAGAAATTGGAAATTATTTTGTGGCACAAAATCAGAAATCCAAGGAGAGGGACTTTGATGCTGACATATTCTCTTTGATGTACAACAACAAAGAAATGTTCCAAATGTCATTTGGGAATCAAGAATATTATGCATGTGGTTCTTTAGGACATGTGGACAATGGTTCCCTATGGAATTTTTAG 975 0.3764 MSEEMKKFELPPGFRFHPTDEELITHYLTQKVLQHDDENCFYATAIIGEADFNKCEPWDLPWKGKMGEKEWYFFCLKDKKYPTGLRTNRATGAGYWKATGKDKEIYNAEALIIGMKKTLVFYKGRAPNGEKTNWVMHEYRLEGHHKHSMYNLPKTTKKEWALCRVLHKSEKKMNVPQLMDPSQVTLFSDPNNNQSDDPNPMTHEEDNDDIIVDSFETPPFLEQPYSSSSYDSSNLDTLNLNHATWDFTKNAPNSNVSNHSTQIGQEIGNYFVAQNQKSKERDFDADIFSLMYNNKEMFQMSFGNQEYYACGSLGHVDNGSLWNF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc23g00010 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 246 - -
Stsc23g00010 324 Pfam No apical meristem (NAM) protein 11 141 IPR003441 GO:0003677|GO:0006355
Stsc23g00010 324 MobiDBLite consensus disorder prediction 182 198 - -
Stsc23g00010 324 Gene3D NAC domain 19 173 IPR036093 GO:0003677|GO:0006355
Stsc23g00010 324 ProSiteProfiles NAC domain profile. 10 168 IPR003441 GO:0003677|GO:0006355
Stsc23g00010 324 SUPERFAMILY NAC domain 5 168 IPR036093 GO:0003677|GO:0006355
Stsc23g00010 324 FunFam NAC domain-containing protein 100-like 19 172 - -
Stsc23g00010 324 MobiDBLite consensus disorder prediction 182 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc23g00010 Stsc-Chr23 35740 37763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc23g00010 1 181 NAC Transcription Factor Family AT5G39610 66.484 2.86e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc23g00010 NAM 4.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc23g00010 - - ahf:112784292 391.349