Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc239g00005 ATGGAGCTTGGTGGTGGTGGTGGTGGCGGCGACGGAGGTGGAGGTAGTCATCATATTGATCAAGGATCTTCATCTCATCATCAGAATCAGAAGAGAATGGGAAGAGGAAAGATCGAGATAAAGCGGATCGAGAACACGACGAATCGCCAAGTGACGTTCTGTAAGCGCCGCAACGGATTGCTTAAGAAAGCCTATGAACTGTCTGTGCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCAGCCGTGGCCGTTTGTATGAGTATGCAAACAACAGTGTTAGGGCAACAATTGAAAGGTACAAAAAAGCATATGCTACCACCTCAAACGCAGAATCAGTCTCTGAAGCTAACACCCAGAAAAACCCTACTAATAATAACAATATGTACCAATGTCAGTTTTACCAGCAAGAATCAACCAAATTGAAAAGACAGATCCGAGAGATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTCAGCACTCTAAGCCTTAAGGAATTAAAGAACCTCGAAAGCAGATTGGAGAAAGGCTTAAGCAGAGTCAGATCCAGAAAGGAAATTGAGCTTCAAAACCACAACAATTTTCTGAGAGCAAAGATAGGTGAATTTGAGAGAGCTCATGAACAACAACAACATCAACATGAACAAAATTTCTTAATGGCAGCAGGTGCAGGAACTATCTGTGAGACAATGGCATCTTCCCAACAACAACCACCACCACAATCACCATTTGATCGCAACTTCTTTTAA 756 0.4299 MELGGGGGGGDGGGGSHHIDQGSSSHHQNQKRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKAYATTSNAESVSEANTQKNPTNNNNMYQCQFYQQESTKLKRQIREIQNLNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKEIELQNHNNFLRAKIGEFERAHEQQQHQHEQNFLMAAGAGTICETMASSQQQPPPQSPFDRNFF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc239g00005 251 MobiDBLite consensus disorder prediction 1 37 - -
Stsc239g00005 251 CDD MADS_MEF2_like 34 103 IPR033896 GO:0000977|GO:0045944
Stsc239g00005 251 Coils Coil 166 186 - -
Stsc239g00005 251 Gene3D - 45 120 IPR036879 GO:0003677|GO:0046983
Stsc239g00005 251 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Stsc239g00005 251 FunFam MADS-box transcription factor 21 45 111 - -
Stsc239g00005 251 SUPERFAMILY SRF-like 34 108 IPR036879 GO:0003677|GO:0046983
Stsc239g00005 251 ProSiteProfiles K-box domain profile. 132 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc239g00005 251 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Stsc239g00005 251 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Stsc239g00005 251 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Stsc239g00005 251 Coils Coil 132 155 - -
Stsc239g00005 251 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
Stsc239g00005 251 MobiDBLite consensus disorder prediction 232 251 - -
Stsc239g00005 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Stsc239g00005 251 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Stsc239g00005 251 Pfam K-box region 131 216 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc239g00005 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc239g00005 Stsc-Chr239 30633 37266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc239g00005 13 251 MADS-box Gene Family AT2G42830 56.471 6.64e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc239g00005 K-box 3.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc239g00005 K09264 - gmx:100808734 278.485