Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc239g00004 ATGGCTGCTAGATTCGCTTCCAGATGCTCTCGTGTGAGCCGTTCTCTGTTCGGTGGATTAAGCAACAACTCCCCTGGTTTATTTACCACATCACATGAGATGACATGCAGCAATTCCTTTTCTCAGCTGCAGCAACAGCGCACTTTCATACAAATGAGGACCGTTCTCAAGGTTGCAGACAACTCGGGGGCTAAAAAGGTCATGTGTATACAGGCTCTGAAAGGTAAGAAAGGGGCGAGATTAGGCGACACAATAGTAGCATCCGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAAAAGTAGTATATGGTGTGGTTGTGCGTGCTGCAATGCAAAGGGGCCGATGCGATGGCAGTGAGGTCAAGTTTGATGACAATGCCGTGGTGCTTGTCGACAAGCAAGGCCAGCCAATTGGGACTAGAGTTTTTGGACCTGTCCCTCATGAACTGAGGCAGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCTTGA 507 0.4793 MAARFASRCSRVSRSLFGGLSNNSPGLFTTSHEMTCSNSFSQLQQQRTFIQMRTVLKVADNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc239g00004 168 SUPERFAMILY Ribosomal protein L14 50 167 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc239g00004 168 ProSitePatterns Ribosomal protein L14 signature. 106 132 IPR019972 -
Stsc239g00004 168 NCBIfam 50S ribosomal protein L14 50 167 IPR005745 GO:0003735|GO:0006412|GO:0015934
Stsc239g00004 168 Hamap 50S ribosomal protein L14 [rplN]. 49 168 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc239g00004 168 FunFam 50S ribosomal protein HLP, mitochondrial-like 49 168 - -
Stsc239g00004 168 Gene3D Ribosomal protein L14 49 168 IPR036853 GO:0003735|GO:0005840|GO:0006412
Stsc239g00004 168 Pfam Ribosomal protein L14p/L23e 50 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc239g00004 168 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 50 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Stsc239g00004 168 SMART Ribosomal_L14_2 49 168 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc239g00004 Stsc-Chr239 18634 20918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc239g00004 59 151 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 37.000 7.56e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc239g00004 K02874 - gmx:100818301 291.582