Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc238g00011 ATGAAGAGATGGTACCTTAGGCCTGATGATAGCACAGTTTACTTTGATCCGAATAAACCAGAAGTTGCTGCACTTCTTCATTTCTTGACAGCACTTATGTTGTACGGTTACTTGATTCCGATCTCCTTATATGTATCGATCGAAATTGTGAAGGTTCTTCAGAGCATCTTCATCAACCAGGATGTGCAAATGTACTATGCAGAAACCGACAGGCCGGCCCATGCTCGCACGTCGAATTTGAATGAGGAACTTGGTCAAGTTGATACCATCCTTTCGGATAAAACAGGAACTTTGACTTGCAATTCTATGGAATTCATCAAGTGTTCTATAGGCGGTGTTGCTTATGGAAGAACAGTTACAGAAGTTGAGAGAGCTCTATCTAAGAGAAAAGACTCACCATTTGGACCAAAGTCTATCAACAATGTTGCAAAGCCATCCATTAAAGGGTTTAACTTCACAGATGAAAGGATGATGAATGGAAATTGGGTCAGAGAACCTAATGCCAATGTGATTCATAACTTCCTAACTTTGTTGGCTGTATGCCATACAGCAATTCCTGAGGTTGATGAAGTAACCGGCAAGGTTTCGTATGAAGCTGAATCGCCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAACTTGGTTTTGAGTTCTATGAAAGGACACACACGGCTATTTCGCTGCGTGAATTTGATCCTAGATCAGGCCGGAAAATTGAAAGGTCCTACAAACTTCTAAATGTATTAGAGTTTAACAGTGCAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGAAGGGAAGCTGCTACTACTTAGCAAAGGCGCTGACAGTGTCATGTTTGAAAGGCTTGCGAGCAACGGAAGGGAGTTTGAAGAGAAGACTAAGGAACACATTAGCATTTATGCTGATTCTGGTTTGAGGACCTTGATACTTGCGTATCGTGAGCTTAACGAGGAAGAGTACAATCAATTCAACATAGAATTCACAGAGGCCAAGAACTTAGTGAGTGCAGATCAAGAGCAAATTGTAGAGGAAATAGTAAACAACATGGAGAAGGATTTGATTCTACTTGGTGCTACTGCTGTTGAAGACAAACTTCAAGATGGGGTTCCTGAGTGCATTGACAAACTAGCACAGGCAGGGATTAAGCTATGGGTTCTGACTGGTGATAAAATGGAGACAGCAATCAATATTGGATTTGCTTGTAGTTTACTCAGACAAGGGATGACACAAATTATAATTAGCTCAGACACACCTGAAACCAAAACATTGGAGAAAATGGAGGATAAGTCTGCTGCTGACGCGGCAATGAAGGCGAGTGTTGTTCGTCAGATACAGGGGGGAAAGAAACTACTTTCTACATCAGATGAAAACTCCGAGGCGCTGGCTCTGATTATTGATGGGAAGTCTCTTACTCATGCATTGGAAGATGACGTGAAGGACTTGTTTCTTGAACTTGCTGTTGGCTGTGCGTCTGTTATATGCTGTCGTTCGTCTCCCAAGCAGAAAGCACTTGTCACAAGGCTAGTTAAGAATAAAACTGGAAGTACAACTCTAGCAATTGGAGACGGCGCAAACGATGTTGGAATGCTTCAAGAAGCGGACATTGGAATTGGTATCAGTGGTGTCGAAGGAATGCAAGCCGTAATGTCAAGCGATATTGCAATTGCCCAATTTCGATTTTTGGAGCGCTTACTTCTTGTGCACGGACACTGGTGTTACAGAAGGATCTCATCCATGATATGTTACTTCTTTTACAAGAATATCGCCTTCGGCTTCACTCTATTCTTCTTTGAGATGTATGCTTCATTCTCAGGACAAGCTGCATACAATGACTGGTTCATGTCACTATATAATGTCTTCTTCACTTCGCTACCCGTGATTGCGTTGGGAGTTTTCGACCAAGATGTTTCTTCTAAAATCTGCCTCAAGTTTCCACTATTATATCAAGAAGGTGTGCAAAATATCCTATTTAGCTGGAAGCGAATCGCCGGCTGGATGTTCAACGGGGTTGCTAGCTCTGCCATCATATTCTTCTTCTGCATTAACACATTGCAGCACCAAGCATTCCGAAAAGGCGGCGAAGTTGGCGAGATGGAAGTCCTCGGCGCCACCATGTACACTTGTGTAGTGTGGGTGGTGAATTGCCAAATGGCATTATCCATAAGTTACTTCACTTACATTCAACACATCTTCATTTGGGGAAGCATTGCATTATGGTACATTTTCCTTTTGGCCTATGGAGCCATGACTCCAACTTTCTCAACCACTGCCTATAAAGTCTTCATCGAAGCTCTAGCGCCGGCCCCGTCTTACTGGCTGATCACTCTGCTAGTCCTTGTCGCCGCACTGCTTCCATATTTCACCTACGCTTCGATCCAGATGCGATTCTTCCCCATGTTCCATCAAATGATACAATGGATAAGAAAGGATGGACAAACAAATGATCCAGAATACTGTAATGTGGTGAGGCAGAGATCCATAAGACACAACACGGTTGGGTTCACGGCTCGTTTGGAAGCATCGAAACGATTCGAAGGGTCTAGACGAATGGAAGCATCTTTCCATATTGAAGGGAGAGCCGTGTACCAATGA 2598 0.4323 MKRWYLRPDDSTVYFDPNKPEVAALLHFLTALMLYGYLIPISLYVSIEIVKVLQSIFINQDVQMYYAETDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGVAYGRTVTEVERALSKRKDSPFGPKSINNVAKPSIKGFNFTDERMMNGNWVREPNANVIHNFLTLLAVCHTAIPEVDEVTGKVSYEAESPDEAAFVIAARELGFEFYERTHTAISLREFDPRSGRKIERSYKLLNVLEFNSARKRMSVIVRDEEGKLLLLSKGADSVMFERLASNGREFEEKTKEHISIYADSGLRTLILAYRELNEEEYNQFNIEFTEAKNLVSADQEQIVEEIVNNMEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMTQIIISSDTPETKTLEKMEDKSAADAAMKASVVRQIQGGKKLLSTSDENSEALALIIDGKSLTHALEDDVKDLFLELAVGCASVICCRSSPKQKALVTRLVKNKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEMYASFSGQAAYNDWFMSLYNVFFTSLPVIALGVFDQDVSSKICLKFPLLYQEGVQNILFSWKRIAGWMFNGVASSAIIFFFCINTLQHQAFRKGGEVGEMEVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGSIALWYIFLLAYGAMTPTFSTTAYKVFIEALAPAPSYWLITLLVLVAALLPYFTYASIQMRFFPMFHQMIQWIRKDGQTNDPEYCNVVRQRSIRHNTVGFTARLEASKRFEGSRRMEASFHIEGRAVYQ 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc238g00011 865 FunFam Phospholipid-transporting ATPase 200 358 - -
Stsc238g00011 865 ProSitePatterns E1-E2 ATPases phosphorylation site. 93 99 IPR018303 -
Stsc238g00011 865 FunFam Phospholipid-transporting ATPase 358 562 - -
Stsc238g00011 865 Pfam Phospholipid-translocating P-type ATPase C-terminal 550 800 IPR032630 -
Stsc238g00011 865 NCBIfam HAD-IC family P-type ATPase 489 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc238g00011 865 Gene3D - 354 562 IPR023214 -
Stsc238g00011 865 SUPERFAMILY HAD-like 86 577 IPR036412 -
Stsc238g00011 865 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 813 - -
Stsc238g00011 865 SFLD Haloacid Dehalogenase 73 573 - -
Stsc238g00011 865 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 98 359 IPR023299 GO:0000166
Stsc238g00011 865 SUPERFAMILY Calcium ATPase, transmembrane domain M 26 800 IPR023298 -
Stsc238g00011 865 Pfam Cation transport ATPase (P-type) 192 283 - -
Stsc238g00011 865 NCBIfam phospholipid-translocating P-type ATPase 3 807 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc238g00011 865 PRINTS P-type cation-transporting ATPase superfamily signature 91 105 - -
Stsc238g00011 865 PRINTS P-type cation-transporting ATPase superfamily signature 408 418 - -
Stsc238g00011 865 PRINTS P-type cation-transporting ATPase superfamily signature 522 541 - -
Stsc238g00011 865 Gene3D - 197 335 IPR023299 GO:0000166
Stsc238g00011 865 SFLD p-type atpase 73 573 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc238g00011 Stsc-Chr238 58376 62189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc238g00011 2 845 Primary Pumps ATPases AT3G25610 72.759 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc238g00011 K01530 - gmx:100799312 1470.29