Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc238g00008 ATGGAAAACCTAGTCACCCCATCACACCAATCTCATCAAAACCAAAACAAGAACCTAACTTTGGTTGATGAGAATAAAGGGGTAGTAGTAGTATCAGATAGTAGCATCATGAATAATAAAAATAATAGGGTTTCATCAAAAAAGAATGGTGAGAAGAAGAAGAAGTTTCTTGGGGTTAGGCAAAGGCCTTCAGGAAGATGGATTGCAGAGATCAAAGATTCTTCACAGAAACTAAGGCTTTGGTTGGGAACTTATGATAGAGCAGAAGATGCTGCACTTGCTTATGATTCTGCTGCAAGGATTCTCAGAGGAAGAAATGCTAAGACAAATTTTCCAATTAGCCATGGAGGTGGACATGGACATGCTAGTATTCTTGGCAAGAATCCAAGGGCTTACCAGCTCCTTAAACATCATGCGGTTATGAAGAGCCGCGTTGCAGTTTCATCGGTTGTGCCTTCAGGAGGAGGGCACAACCAAACCATCTTTAGGGACCCATTTGAGACTTTTGTTTTCGAGGACAACAATAATAGTGTTGTTTGCCCCATCATCCCTGATGATGAAGAACAAGGTTCAGCTGATGGGTTTTCATTTGGATGTTGTAAGGTTTATTCTTCTGTTATTGTAGCTCCTTCTTTCAGTGCTTGA 645 0.4093 MENLVTPSHQSHQNQNKNLTLVDENKGVVVVSDSSIMNNKNNRVSSKKNGEKKKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTYDRAEDAALAYDSAARILRGRNAKTNFPISHGGGHGHASILGKNPRAYQLLKHHAVMKSRVAVSSVVPSGGGHNQTIFRDPFETFVFEDNNNSVVCPIIPDDEEQGSADGFSFGCCKVYSSVIVAPSFSA 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc238g00008 214 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Stsc238g00008 214 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 44 136 - -
Stsc238g00008 214 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Stsc238g00008 214 Gene3D AP2/ERF domain 54 114 IPR036955 GO:0003700|GO:0006355
Stsc238g00008 214 FunFam ethylene-responsive transcription factor RAP2-11 54 113 - -
Stsc238g00008 214 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Stsc238g00008 214 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Stsc238g00008 214 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Stsc238g00008 214 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Stsc238g00008 214 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc238g00008 Stsc-Chr238 38596 39403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc238g00008 45 111 AP2-EREBP Transcription Factor Family AT5G19790 61.194 3.83e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc238g00008 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc238g00008 K09286 - gmx:100800716 182.185