Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc237g00001 ATGACAGACCCACATTATTCCAATCTATACGCCTCATCAGGAAGCTTCAACTTCATGCCCCTCCACCCCTACTACTTCCCTTCCTCCTCTTCCTCTTCCTCATCTTTAATTTCTAACCAAAATTCCAATAACACTTCCCTCTTCTCATCATCATCATCATCACCACCGTATCCTCTGGCTTTCTCAAACACCAGATTATTCTCCGTCCAATTCGAACCACCGTCTTCATCTTCTTCTTCTTCTTCCATGGCGCTTCCAACTACTCCTTCTTTCCCTCCTCTTATAGAGGCCCTTCCTCTCATAAACACCATTAGCCTCAAAACCAATAACAATAACATCAAAGAACCATCAAATAACAGCAGTGATCAAAAAGTGGTACTGTTCAATAATAAGAGAAGAAAAGATGAAGAGAATAATCTTCTACTGATCGATGACTATGACAATGATGAATCTGTGGCAGTAGCGCTAAGAATAGGGCTTCCTAATAGCATGTCTAATAATAACACTTCCAGTATTATTGATGGGCCAATGATGAAGAAGATCTCCTCATCAATGGCGAGTGATGATGAAAAGGATGAAGTAGTGATGAGCGTGGTTTCTGAGCAGCCTCCTTTGTTATTAGAGAGATTTATTAACAATAATAATAATAATAACAAGGCATATCAGTTTCAGTATTGGATTCCCACACCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCATGCCCTGTCTGCTCCAAGACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGTCCAGAGTCTCTGAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTCTGTTGCGCTCAAGATTGCAAGCACCACATTGACCACCCAAGAGCAAGGCCTCTAAAGGATTTTAGAACCCTCCAAACTCATTACAAGAGAAAGCATGGCGTGAAACCCTATGCGTGCCGGAAATGCAGCAAGCCATTCGCCGTGAAAGGCGATTGGCGGACGCACGAGAAGAACTGCGGCAAGATATGGTATTGTTTGTGTGGCTCTGATTTCAAGCATAAGAGGTCCTTGAAGGATCATGTCAAGGCCTTTGGCTATGGACATGGTGCTTTCGGTATTGATTGCATGCAAGAGGAGGAGGAAGCAGCTTCCGAAGTTGAACATAATGGTGATTGCTCGTTTTAA 1206 0.427 MTDPHYSNLYASSGSFNFMPLHPYYFPSSSSSSSSLISNQNSNNTSLFSSSSSSPPYPLAFSNTRLFSVQFEPPSSSSSSSSMALPTTPSFPPLIEALPLINTISLKTNNNNIKEPSNNSSDQKVVLFNNKRRKDEENNLLLIDDYDNDESVAVALRIGLPNSMSNNNTSSIIDGPMMKKISSSMASDDEKDEVVMSVVSEQPPLLLERFINNNNNNNKAYQFQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCFCCAQDCKHHIDHPRARPLKDFRTLQTHYKRKHGVKPYACRKCSKPFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVKAFGYGHGAFGIDCMQEEEEAASEVEHNGDCSF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc237g00001 401 SUPERFAMILY beta-beta-alpha zinc fingers 233 262 IPR036236 -
Stsc237g00001 401 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Stsc237g00001 401 Gene3D Classic Zinc Finger 305 375 - -
Stsc237g00001 401 PANTHER ZINC FINGER PROTEIN WIP2 70 394 IPR043584 GO:0003700|GO:0010468
Stsc237g00001 401 Gene3D Classic Zinc Finger 239 262 - -
Stsc237g00001 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Stsc237g00001 401 SMART c2h2final6 324 344 IPR013087 -
Stsc237g00001 401 SMART c2h2final6 240 262 IPR013087 -
Stsc237g00001 401 FunFam zinc finger protein WIP2-like 239 262 - -
Stsc237g00001 401 SUPERFAMILY beta-beta-alpha zinc fingers 309 344 IPR036236 -
Stsc237g00001 401 FunFam Zinc finger protein WIP2 293 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc237g00001 Stsc-Chr237 3896 8096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc237g00001 224 394 C2H2 Transcription Factor Family AT3G57670 84.211 2.02e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc237g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc237g00001 - - gmx:100794446 422.935