Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc236g00008 ATGGATGAAAAGCACCGAACCGTCGCGTCTCTTGTATCGAAGCTAAGCTCCGTGTCCGAACGAACAAGAATCGACGCGCTCTGCGAGCTTCGGCAGATGTCGAAGCTGGACCCGGAAACCCGACCCATAATCGCCGAAGCTGGCGCCATCCCTTTCATCGCCGAAACACTCTACTCTTCCTCTCACCCTTCTCAAGAAAACGCCGCCGCCACGCTCTTAAACCTTTCCATCTCCGCAAAGGAACCGTTGGTTTCCACGCGCGGTGTTCTCGACGCCATAGCACACGTGATCTCCCACCACTCCTCCTCCTCCTCCCCCTCCGCCGTGCAGTCCGCCGCAGCCACGATTCACAGCCTCCTCGCCGCCACCGACGACTACCGCCCCTCCGTCGGCGCCAAGCGCGACATCGTCTACGCGCTCGTGGACATCCTCCGGTGCCACGTGTCGTCCCCTCCGAGAACCATCAAGGACGCGCTGAAGGCGCTGTTCGGCATCGCGCTTTACCCTCCGAACCGCGCCACGATGGTGCATCTCGGCGTGATCCCCGCGCTTTTCGCCCTTGTGGTAAAGGACGGGCGCGTGGGGATCGTCGAGGACACCACCGCGGTGATCGCTCAGGTAGCCGGGTGCGAGGAGAGCGGCGAGGCCTTCCGGAAGGTCTCCGGGGTTGGGGTTCTTGCCGATCTCCTCGACCTGTCTACTGGCGCCAGTATGCGCAGCAAGGAGAATGCCGTGTCGGCCTTGCTGAATTTGGTGCGGTGCGGTGGTGAGCGCGTTTTGGCGGAGGTCAGGGAGGCGGTTGCGGATGTTGCCGCTGATGGGATCGAGGATGTGGAGGAGAATGGAAGCACCAAGGGGAAGAGCAAAGCGAAGGAATTGTTGAAGGTTTTGTTTGGTGATGATGATGATGTTCATGATGATAACAGTAGCAACAGCGTTTTGAGTTCCGGTAGAGGTTCGCAGTTTGATTCATTCTAG 978 0.5971 MDEKHRTVASLVSKLSSVSERTRIDALCELRQMSKLDPETRPIIAEAGAIPFIAETLYSSSHPSQENAAATLLNLSISAKEPLVSTRGVLDAIAHVISHHSSSSSPSAVQSAAATIHSLLAATDDYRPSVGAKRDIVYALVDILRCHVSSPPRTIKDALKALFGIALYPPNRATMVHLGVIPALFALVVKDGRVGIVEDTTAVIAQVAGCEESGEAFRKVSGVGVLADLLDLSTGASMRSKENAVSALLNLVRCGGERVLAEVREAVADVAADGIEDVEENGSTKGKSKAKELLKVLFGDDDDVHDDNSSNSVLSSGRGSQFDSF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc236g00008 325 Gene3D - 2 279 IPR011989 -
Stsc236g00008 325 SMART arm_5 210 253 IPR000225 GO:0005515
Stsc236g00008 325 SMART arm_5 37 77 IPR000225 GO:0005515
Stsc236g00008 325 SMART arm_5 168 209 IPR000225 GO:0005515
Stsc236g00008 325 SUPERFAMILY ARM repeat 7 301 IPR016024 -
Stsc236g00008 325 MobiDBLite consensus disorder prediction 309 325 - -
Stsc236g00008 325 PANTHER U BOX DOMAIN-CONTAINING 7 297 - -
Stsc236g00008 325 MobiDBLite consensus disorder prediction 300 325 - -
Stsc236g00008 325 FunFam ARM repeat superfamily protein 2 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc236g00008 Stsc-Chr236 56175 57805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc236g00008 8 297 U-box Gene Family AT1G23030 31.615 1.64e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc236g00008 - - gmx:100787115 421.394