Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc235g00008 ATGGGAAGTTGTTGCAGCAAACTCTGCATATGCTGGTGGCCCTGCTGCTGCTGCAACAAAAGATCAAATCTTCAGGACTTACCCGAAAATGAAGATGGGGGGAACAAGGGTGAGAAGAAGGGTCCTCCTGCTAGCTCTAGCTTCACTGAGTTCAGCTTCGACCAACTGAAAACTGCCACGTCAGCATTCTCCCCCGACAACATTGTCTCTGAACACGGTGAGAAGGCTCCGAACGTTGTCTACAAAGGGAGGCTTGAAGATGATAAGCTTGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATTCTCGACAGTTCCTGGAGGAAGCACGGGCGGTGGGGCAGCTGAGGAGTGAGCGTTTGGCTAACTTGGTTGGGTGTTGCTGTGAAGGAGAAGAGAGGTTGCTAGTGGCGGAGTTTATGCCCAATGAAACTCTCTCCAAGCACCTCTTTCACTGGGAGTCCCAGCCCATGAAATGGGCAATGAGGCTGAGAGTTGCCTTGTATTTGGCACAAGCATTAGATTATTGCAGCAATCAAGGAAGGGCACTATACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGATGGCGACCCTAGACTCTCTTGTTTTGGACTAATGAAAAACAGCAGAGATGGCAAAAGTTACAGTACAAATTTAGCCTTCACCCCTCCAGAGTATTTAAGGACAGGAAGAATCATCCCGGAAAGTGTGATTTACAGTTTTGGAACTCTTTTGCTTGATCTTCTTAGTGGCAAGCATATTCCACCAAGTCATGCACTTGACCTTATTAGAGGCAAAAATTTTTCATTGCTGATGGACTCGTGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAAATAGTGAGACTAGCTTCACGTTGTTTACAGTATGAGCCTCGGGAGAGGCCAAATGCCAAGTCGCTTGTGACTGCTTTAACTCCTCTTCAGAAAGAAGCTTCAGTACCTTCACAAGTTTTGATGGGCATACTGGAGGAGGGTGCGTCATCAAAAGAAAGAGTTTCATTGACGCCTTTTGGTGAAGCTTGCNNNNNNNNNNTCACTGCAATATATGAAATATTGGAAAAGGTTGAGTATAAGGATGATGAGGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAGATCAAATACAAGAAACCCTAAATGCTAAGAAGCATGGAGATTCAGCTTTTCGTTCCAAAAATTACTCTACAGCCATTGACTACTATACACAATTCATTGATGGCGGGACCATGGTATCGCCGACAGTTTATGCAAGGCGCTGCTTGTGTTACTTGATGAACAACATGCCACAAGAAGCTCTTGGAGACGCCATGCAAGCTCAATCGATATCACCAACCTGGCCAACTGCATTCTATCTTCAAGCAGTGGCACTCTTCAGCCTTGGCATGGACAATGATGCCCAGGAAAGTCTTAAAGACGGCACAATGCTCGAATCCAGAAACCAGAGAAATTGA 1494 0.4498 MGSCCSKLCICWWPCCCCNKRSNLQDLPENEDGGNKGEKKGPPASSSFTEFSFDQLKTATSAFSPDNIVSEHGEKAPNVVYKGRLEDDKLVAVKRFNKSAWPDSRQFLEEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWESQPMKWAMRLRVALYLAQALDYCSNQGRALYHDLNAYRILFDQDGDPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRIIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFSLLMDSCLEGHFSNDDGTEIVRLASRCLQYEPRERPNAKSLVTALTPLQKEASVPSQVLMGILEEGASSKERVSLTPFGEACXXXXTAIYEILEKVEYKDDEDVANELSFQMWTDQIQETLNAKKHGDSAFRSKNYSTAIDYYTQFIDGGTMVSPTVYARRCLCYLMNNMPQEALGDAMQAQSISPTWPTAFYLQAVALFSLGMDNDAQESLKDGTMLESRNQRN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc235g00008 497 SUPERFAMILY TPR-like 396 491 IPR011990 GO:0005515
Stsc235g00008 497 FunFam probable serine/threonine-protein kinase At4g35230 38 141 - -
Stsc235g00008 497 FunFam probable serine/threonine-protein kinase At4g35230 390 497 - -
Stsc235g00008 497 FunFam probable serine/threonine-protein kinase At5g41260 143 334 - -
Stsc235g00008 497 SUPERFAMILY Protein kinase-like (PK-like) 42 322 IPR011009 -
Stsc235g00008 497 Gene3D Phosphorylase Kinase; domain 1 38 141 - -
Stsc235g00008 497 Gene3D Tetratricopeptide repeat domain 390 497 IPR011990 GO:0005515
Stsc235g00008 497 ProSiteProfiles Protein kinase domain profile. 66 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc235g00008 497 MobiDBLite consensus disorder prediction 28 48 - -
Stsc235g00008 497 Gene3D Transferase(Phosphotransferase) domain 1 143 335 - -
Stsc235g00008 497 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 25 496 IPR045845 GO:0004672|GO:0009742
Stsc235g00008 497 Pfam Protein tyrosine and serine/threonine kinase 79 317 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc235g00008 Stsc-Chr235 22737 27076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc235g00008 21 317 Glycoside Hydrolase AT3G07070 32.424 5.52e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc235g00008 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc235g00008 - - gmx:732542 806.979