Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc235g00001 ATGAGGAAGCCTGAGGAGGCATGTGGTGGTAGATACAGTAGCGATAACGACGACGAGAATAACGACGACGAGAACAGCAAGAAGAATAAGCTAAGGAAGGGGCTATGGTCACCAGAAGAAGATGAGAAGCTTATGAATTACATGATGAACAATGGACAAGGTTGTTGGAGTGAAGTAGCTAGGAATGCTGGGTTGCAAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATCAATTACTTGAGGCCTGATCTCAAGAGAGGTGCCTTCTCCCCGCAGGAAGAGCAACTTATCCTCCATTTACATTCCCTTCTTGGCAACAGATGGTCTCAAATAGCGGCACAGTTACCTGGTCGAACCGACAATGAAATCAAGAATTTTTGGAATTCAACAATGAAGAAAAGGATCAGTACCACCACCTCAACAACCTCACCAAACACAAGTGATGATAACAGCAAGGAAGGATTTACAATGATGCCTATGTTCAGTTGTTCATCATCATCATCTCAATCACCATCAATCGTTATTGATGAGAGGTTGCCTATGCTGATGGAGAATAATAATAATAATAATGGAGTCATGAACATGCATAATGCTGCTATTGGAAACAATAAAAATTATTGCAATGGAGACAATAGCAAAGTTTATTTTGATGAGGACATGAACACTATCCTTAACAATAAGGTTGTTGGTGTGGAGGAGGATTATTCATTTCAAGAAGAATTAAGCATGGAAGAGTGGGACTTGGAGGAATTTATCAACAAAAGTGCCTCCTCCTCCTTTCCGTTTCTTGATTTTACACTATCATCATGA 810 0.4086 MRKPEEACGGRYSSDNDDENNDDENSKKNKLRKGLWSPEEDEKLMNYMMNNGQGCWSEVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLILHLHSLLGNRWSQIAAQLPGRTDNEIKNFWNSTMKKRISTTTSTTSPNTSDDNSKEGFTMMPMFSCSSSSSQSPSIVIDERLPMLMENNNNNNGVMNMHNAAIGNNKNYCNGDNSKVYFDEDMNTILNNKVVGVEEDYSFQEELSMEEWDLEEFINKSASSSFPFLDFTLSS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc235g00001 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Stsc235g00001 269 Pfam Myb-like DNA-binding domain 86 129 IPR001005 -
Stsc235g00001 269 Pfam Myb-like DNA-binding domain 33 80 IPR001005 -
Stsc235g00001 269 Gene3D - 87 155 - -
Stsc235g00001 269 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Stsc235g00001 269 SMART sant 85 133 IPR001005 -
Stsc235g00001 269 SMART sant 32 82 IPR001005 -
Stsc235g00001 269 FunFam MYB transcription factor 30 86 - -
Stsc235g00001 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 80 IPR017930 -
Stsc235g00001 269 Gene3D - 30 86 - -
Stsc235g00001 269 CDD SANT 36 80 IPR001005 -
Stsc235g00001 269 FunFam Myb transcription factor 88 135 - -
Stsc235g00001 269 PANTHER MYB DOMAIN PROTEIN 55 26 222 - -
Stsc235g00001 269 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Stsc235g00001 269 CDD SANT 88 128 IPR001005 -
Stsc235g00001 269 MobiDBLite consensus disorder prediction 1 35 - -
Stsc235g00001 269 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc235g00001 Stsc-Chr235 6745 7900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc235g00001 3 135 MYB Transcription Factor Family AT3G08500 73.684 1.56e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc235g00001 Myb_DNA-binding 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc235g00001 K09422 - gmx:100786151 258.07