Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2353g00001 ATGTCCACCGTGGCCGTGTTGATTGCTTTCCCGATTGTGAGGCAGCTTGGTTTTTTTGATTTGGAGCGGCTTGTAGATGCCTTTCCTAAGTTGGTGCACGAAGCATTTGTGGGAATGGAGAAGGAAGAAAAGAATCGAGTGATTGATCACTTGGCAAAGCACATAGCACCTGGTGCAGTTCTTATGCTGCGGAGTGCTCATGGTGCTGTGCTTTTCTATATCCTGTTGTTGAACCCTGTGATCTTAGAGGCTTTGAGGTTCTCTCTGTGTTCCACCCTTCTGATGAGGTTATCAATTCTGTTGTCATGCCTCGTAAATACCCTCTTTCTGCGGTTGAACAAGAACAAGGACTTGTTTCTTCTATGA 366 0.4563 MSTVAVLIAFPIVRQLGFFDLERLVDAFPKLVHEAFVGMEKEEKNRVIDHLAKHIAPGAVLMLRSAHGAVLFYILLLNPVILEALRFSLCSTLLMRLSILLSCLVNTLFLRLNKNKDLFLL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2353g00001 121 Gene3D Vaccinia Virus protein VP39 28 83 IPR029063 -
Stsc2353g00001 121 Pfam Nicotianamine synthase protein 19 80 IPR004298 GO:0030410|GO:0030418
Stsc2353g00001 121 PANTHER NICOTIANAMINE SYNTHASE 3 35 89 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2353g00001 Stsc-Chr2353 4640 5528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2353g00001 11 86 Nicotianamine Synthase Gene Family AT1G09240 43.902 4.84e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2353g00001 K05953 - qsa:O6P43_007426 67.0106