Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc233g00010 ATGAAAATGGCGGCTTTAGAGTCAAGTTTGAGAGTGTTATCAGGAGCTCATCCTTCTTGCTTTCCCAACAACAGAAAACCACCCCTAACCATATCCATAACCCTCCTCCGCACACGTGTCTGCACCTCTCTTGCTTCTTCCACTGCCACTGCCCCTTTCCATTTGCAAAATGAAGTTCCCCATCACACCACAAACCACACCAAGCTCTACGCCTCTAACTTGCCATGGTCCCTTTCCCCCGCAGATATCAGCGCTCTATTTTCTCAATGCGGAACTGTTACCGATGTTGAGATGATAAAGAAAAAAGAAGGTGGATTGACTGGCTTCGCCTTCATTACCATGTCTTCTCCCCAAGAGGCTCAGGCTGCTATAAATAAATTCCACTCTCTTCAAGTATCAGGCCGGACAATTAAAGTAGAGCTTGCAAAGAGATTTAAGAAACCCCGTCCTCTGGGTCCTCCTGCCGGAGAGACACGCCATAAAATTTATGCATCGAATCTCGCTTGGAAAGTAAGATCCAGCCATCTCAGAGAATTCATCACTGAGAATTTCAAAGAACCGGTTTCAGCCAGAGTTGTGTTTGACAGCACTTCTGGAAGATGTGCTGGGTATGGATTTGTTTCTTTTGTCACACAGCAGGAAGCGGAGGATGCCATTTCTGCTTTGGATGGGAAGGAATTAATGGGACGAACTGTTAACCTAAAATTTAGCCGAAAGACCATAGAAGAAGCTGATACTGATAGTGACAAAGAAGATCAGGGTTGTAATGATAAATTGGAAACACCAGAAGTGTGA 795 0.4503 MKMAALESSLRVLSGAHPSCFPNNRKPPLTISITLLRTRVCTSLASSTATAPFHLQNEVPHHTTNHTKLYASNLPWSLSPADISALFSQCGTVTDVEMIKKKEGGLTGFAFITMSSPQEAQAAINKFHSLQVSGRTIKVELAKRFKKPRPLGPPAGETRHKIYASNLAWKVRSSHLREFITENFKEPVSARVVFDSTSGRCAGYGFVSFVTQQEAEDAISALDGKELMGRTVNLKFSRKTIEEADTDSDKEDQGCNDKLETPEV 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc233g00010 264 CDD RRM_SF 69 140 - -
Stsc233g00010 264 Gene3D - 157 247 IPR012677 -
Stsc233g00010 264 PANTHER OS02G0815200 PROTEIN 62 237 - -
Stsc233g00010 264 SMART rrm1_1 161 235 IPR000504 GO:0003723
Stsc233g00010 264 SMART rrm1_1 68 140 IPR000504 GO:0003723
Stsc233g00010 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 232 IPR000504 GO:0003723
Stsc233g00010 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
Stsc233g00010 264 SUPERFAMILY RNA-binding domain, RBD 61 151 IPR035979 GO:0003676
Stsc233g00010 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Stsc233g00010 264 Gene3D - 54 156 IPR012677 -
Stsc233g00010 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 144 IPR000504 GO:0003723
Stsc233g00010 264 SUPERFAMILY RNA-binding domain, RBD 151 240 IPR035979 GO:0003676
Stsc233g00010 264 MobiDBLite consensus disorder prediction 239 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc233g00010 Stsc-Chr233 49835 53129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc233g00010 66 250 Eukaryotic Initiation Factors Gene Family AT4G34110 27.895 1.06e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc233g00010 - - lang:109349094 253.832