Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc233g00009 ATGGCTTATCTTGGCGATCCAAGAAGTTGGATTTCATATATGAACAGCAAAGATTGTTCATCAGAGTGGTGTCACATACATAAACTGTATCCTCCTCCATCAACACCGCCACCACCTCATTCAAGCCCAAAATTTTCCCCTCTCATAGTTGCCATGGCTGGGATCTTGGCATCAGCTTTTATTCTTGCAAGTTATTACTATAAGCGCCGCAGAGAGAACAACAATGATGATGACGACGACGAGTCAATCCATGAGACCGCAACCGACATTGGCGTCAACTTTTTAGAGGAGAATGCGTTAAAGTGGATGGCAGTGTGGAAGTACAAGAGAGGAGGCAATCACAGATCCGATAGCTGTTGTGTTTGTCTGAGTGAATTTGAAGAGGGAGAGAGTGTTAGGGTGTTACCCAACTGCACCCATGCTTTTCATCCTCCTTGCATTGAGACCTGGCTCATGTCTCAATCCACCTGCCCTCTTTGTCGTCGTGCCAGTGTTCCAATAGTTTCAGCATACACGGTGGTCGTGGACCTCCCGCTTCATGCTGGAACTACTAGTGGCACTGACACTAGCGAAGAGGAGGAGGGAGGGGAAAGCATACACAATACCGGTGATACTAGTGTTCCTCCTCCTCCTCATGCATTAATGTTGCATAATAACAACAGCCAGCACAGAATTATTGATATAATTGATGATCAGTCCATTAATAAAATTATTGGGAGGTCAGTTTCTATGGACCACCACTCTTTCTCGTCTTCGTCATTGTGGTCGTCACCAAACAGAAGATACAGAGCTCGTGGAGATCATAGTAGCAGTAAGTCCGGCAGCTATAAGAGAAAAAAACACTTGCATTCTGTACTCAGGGGTCCAATCTCTATGAAAAGGTCATTTTCCAGCAGTGAAAGATTCTCACTTACCACAACTAATCACACACCAAGGCACCCAGTTATCATGCCCCCTTTGTAA 963 0.4517 MAYLGDPRSWISYMNSKDCSSEWCHIHKLYPPPSTPPPPHSSPKFSPLIVAMAGILASAFILASYYYKRRRENNNDDDDDESIHETATDIGVNFLEENALKWMAVWKYKRGGNHRSDSCCVCLSEFEEGESVRVLPNCTHAFHPPCIETWLMSQSTCPLCRRASVPIVSAYTVVVDLPLHAGTTSGTDTSEEEEGGESIHNTGDTSVPPPPHALMLHNNNSQHRIIDIIDDQSINKIIGRSVSMDHHSFSSSSLWSSPNRRYRARGDHSSSKSGSYKRKKHLHSVLRGPISMKRSFSSSERFSLTTTNHTPRHPVIMPPL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc233g00009 320 CDD RING-H2_EL5-like 118 161 - -
Stsc233g00009 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 165 IPR013083 -
Stsc233g00009 320 PANTHER RING-H2 FINGER PROTEIN ATL16 33 297 IPR044600 GO:0016567|GO:0016740
Stsc233g00009 320 MobiDBLite consensus disorder prediction 182 217 - -
Stsc233g00009 320 MobiDBLite consensus disorder prediction 297 312 - -
Stsc233g00009 320 SUPERFAMILY RING/U-box 101 167 - -
Stsc233g00009 320 Pfam Ring finger domain 117 161 IPR001841 -
Stsc233g00009 320 SMART ring_2 119 160 IPR001841 -
Stsc233g00009 320 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Stsc233g00009 320 MobiDBLite consensus disorder prediction 297 320 - -
Stsc233g00009 320 MobiDBLite consensus disorder prediction 247 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc233g00009 Stsc-Chr233 45854 46816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc233g00009 1 177 C3H Transcription Factor Family AT3G03550 37.443 1.45e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc233g00009 - - aip:107616926 331.643