Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc232g00003 ATGGCACAAAGGCTGTTCAAGATTAATCCAGAGCCGGATGAAGACAAAAGACTTGATATAGCACAAGAGCTTGGGATGTCTCCGAACCAAGTCAAGTTTTGGTTCCAGGACAGGAGGAATCAGAAGAAGAGTAAAGAAGATAATGAAATGATGGAGAAGGAAACCGATGATGAATTCAAGGAAAAGCTGAAGGATTTGATGAAAATGTGCCAAGCTAGTGAAGAAGGTAGTCGTGGTCCTTCGAATTCTGCTGCTGCCGATGGGGATAACTCCTTTGAACAACTTATGAATGATAATCAACCACTTAAATACGAGAGCGATGATGATGAATTATCGTGCCTAATAAGGTACATAGAGGATCATCCCTTGTCGAAACCAATCTCACTGCAAAGTTTCCTGAACCCAACAACATCAATTGAAAGGAGAGATTCTACTCTCAATCACAGTAGTTCTTATCACTCCTCCTCGTGGTCAAAGGGTGAAACTTCTATGCCACCAGCAGAAAGAAATAGAATGATGGAAAGTGAAAGAGCATTAATGGTTGAAGTTGCAAAGGCTACAATGGAGGAAGTGGTTGTTCTTGTGAGCACCAATGAGCCACTTTGGGAGTCCATCAATTCTCCAAATAGTGCTTCAAGACTTGTTCTTATCCCTGAAATCTATGACACATTGTCTCATAGATTTCCTATTAGGGTTTATGATAATAATCATCATCACTTCAATAATAACTCCACCACAATGCGTGTAGAATCTTCTAGAGATTCAAGAATTGTGAAACTTCAAGCTTCGGAGCTCGTTGACGCGATTCTTAATCATACTTGTTGGACCAATATGTTCCCCACAATGATTCCGAAAGCCATAACCCTGCAAGTGCTTAAGAAAGGTACTGGCGAAGGAAATCAACATGGAGCTTTGCAGCTGGAAGAGATGCACCTTCTGTCACCTCTATTGCCAACTCGTGAATTCTTTTTGCTGCGATTCTGTCAACAACTTGAATCAAATGCATGGTTCATAGCTGACGTGTCATATAATCACGCTAAAGAGGAGAAACCCGCTGACCAATTTCGGGCTTGGAAGCGTCCTTCCGGTTGCAAAATTGAAGCATTGCCGGATGGCACCTCTCGGGTTACATGGGTTGAGAATGTGTTAGTGGATGACCTATTCCAAACTCACCCTCTCTTTAGAGATCTGCTTCTTAAGAGTGGAAGCACTGCATATGGAGCAGAAAAATGGCTCATGGAAATCCAGAGGACATCTGAAAGGTTTGCCAGCTTCACTTCCGATCACAACAGTAACTACGAAATTGAAGGAGTTATGATATCATTGTCCGGAGAAAGAAGGAATCTAATGAGAGTGTGTCAGAGAATGGTGAGGGAGTTTTGTGGGATTCTAAAGTACTCAAGCAAGAAAGAATACAACCAAAATCCAAGTGAGCGAGTCAGAGACAATGGAATTAGGTTCTCCATTTGTGACGAAATTGATGAAGAAGAAGAAGCTCATCATCACACAAGTAGCAATGATAGCAATGCTGTTCTTGCTGCCTCTATTTGGCTTCCTTTTACTTCTCAACATCTCTTTAGCTTCTTCTCAGATCCAAAAACTCGTTCTCAGTGGGACTTTATTTGTTCCAGAAATCGGGTGGAAGAAGTTGCACGTTTCTCAACTGGGACTCATCCTGACAACTATATATCACTTATGCGGCTTGTGAAGGCTGTTGCTAATAAAGCAATGATAATTATTCAAGAAAGCTTCACAAGTTCTTGTGGATCATACATCATATACAGTCCAATCACTGAGGAAGACTTGTACACTGCTATCCATGGCGACCGAGAAGCATCAATTTCGGTGCCGATCCTTCTTTATGGACTAACCATCTCCGATGATGAAGATCATAATGATGATGATGGAGGGGACAATAATGGTGTAATTGGTTCATCACTCTTAGCTCTTACTCTTCAGGTTCCCATTCGAAAAGGCCAAGATGATGGTGGTGGTGGTGAATTCATTATGGAACCGTCTGAGGCTTCTGCTGCAGAAATCATTGTCAAGATTATTGAGAAAATCAAGGTTGCACTTGATTGTCCTGAATCTGATGCGGAGGATGATTCTGGCGGCAATGATGATTAG 2127 0.418 MAQRLFKINPEPDEDKRLDIAQELGMSPNQVKFWFQDRRNQKKSKEDNEMMEKETDDEFKEKLKDLMKMCQASEEGSRGPSNSAAADGDNSFEQLMNDNQPLKYESDDDELSCLIRYIEDHPLSKPISLQSFLNPTTSIERRDSTLNHSSSYHSSSWSKGETSMPPAERNRMMESERALMVEVAKATMEEVVVLVSTNEPLWESINSPNSASRLVLIPEIYDTLSHRFPIRVYDNNHHHFNNNSTTMRVESSRDSRIVKLQASELVDAILNHTCWTNMFPTMIPKAITLQVLKKGTGEGNQHGALQLEEMHLLSPLLPTREFFLLRFCQQLESNAWFIADVSYNHAKEEKPADQFRAWKRPSGCKIEALPDGTSRVTWVENVLVDDLFQTHPLFRDLLLKSGSTAYGAEKWLMEIQRTSERFASFTSDHNSNYEIEGVMISLSGERRNLMRVCQRMVREFCGILKYSSKKEYNQNPSERVRDNGIRFSICDEIDEEEEAHHHTSSNDSNAVLAASIWLPFTSQHLFSFFSDPKTRSQWDFICSRNRVEEVARFSTGTHPDNYISLMRLVKAVANKAMIIIQESFTSSCGSYIIYSPITEEDLYTAIHGDREASISVPILLYGLTISDDEDHNDDDGGDNNGVIGSSLLALTLQVPIRKGQDDGGGGEFIMEPSEASAAEIIVKIIEKIKVALDCPESDAEDDSGGNDD 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc232g00003 708 ProSiteProfiles 'Homeobox' domain profile. 1 45 IPR001356 GO:0003677
Stsc232g00003 708 MobiDBLite consensus disorder prediction 75 95 - -
Stsc232g00003 708 SMART START_1 182 421 IPR002913 GO:0008289
Stsc232g00003 708 SMART HOX_1 2 49 IPR001356 GO:0003677
Stsc232g00003 708 SUPERFAMILY Bet v1-like 444 629 - -
Stsc232g00003 708 Gene3D - 2 53 - -
Stsc232g00003 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 3 692 IPR042160 -
Stsc232g00003 708 MobiDBLite consensus disorder prediction 36 71 - -
Stsc232g00003 708 MobiDBLite consensus disorder prediction 140 163 - -
Stsc232g00003 708 CDD homeodomain 3 46 IPR001356 GO:0003677
Stsc232g00003 708 ProSiteProfiles START domain profile. 173 424 IPR002913 GO:0008289
Stsc232g00003 708 MobiDBLite consensus disorder prediction 36 95 - -
Stsc232g00003 708 SUPERFAMILY Homeodomain-like 4 44 IPR009057 -
Stsc232g00003 708 SUPERFAMILY Bet v1-like 177 385 - -
Stsc232g00003 708 Pfam Homeodomain 4 43 IPR001356 GO:0003677
Stsc232g00003 708 Gene3D - 230 387 IPR023393 -
Stsc232g00003 708 Pfam START domain 243 386 IPR002913 GO:0008289
Stsc232g00003 708 ProSitePatterns 'Homeobox' domain signature. 20 43 IPR017970 GO:0000981|GO:0006355
Stsc232g00003 708 MobiDBLite consensus disorder prediction 140 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc232g00003 Stsc-Chr232 17783 21436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc232g00003 3 697 Homeobox Transcription Factor Family AT1G73360 31.761 1.98e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc232g00003 START 2.2e-19 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc232g00003 K09338 - gmx:100794552 373.244