Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc232g00002 ATGAGTTCTTCAGTGACAGGGGCTGCTGCTGGATCCGGTGGTGTTGGTGGATTTGGTGCTGGCGGTGATGATGGAGGAAGTAACAATGACAAAAGAAAAAGACTTGCCTACAAACGTCTTACTTCTGCTCAAACAGCTAAACTTGAAAAGTACATTATTGATTGTCCTCATCCTGATGAAGCTCAACGAAGGCAACTTGCTGAGGAGGTTGGAATTGAGCCAAAGCAAGTCAAGTTTTGGTTTCAGAATAAGAGAACTCAAATCAAGAATCAACATGAGCGAGCAGATAACAATGCTCTTCGGGCTGAGAACGAAAGGATACAAAACGAGAACCTGCTAATGAGAGAAGCACTTAACAATATACTTTGCCCTTTTTGTGGGGGCCCACCTTCCACAGATGAAGACCATGAACTCTACGTGCAGAGAATGGCTCTTGAAAATGCCCACCTTAAGGAACAGGCAAGTCAAAACTACTCCTTCAATGGACTCACTGAGATATATAACATTTATTAA 513 0.4288 MSSSVTGAAAGSGGVGGFGAGGDDGGSNNDKRKRLAYKRLTSAQTAKLEKYIIDCPHPDEAQRRQLAEEVGIEPKQVKFWFQNKRTQIKNQHERADNNALRAENERIQNENLLMREALNNILCPFCGGPPSTDEDHELYVQRMALENAHLKEQASQNYSFNGLTEIYNIY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc232g00002 170 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Stsc232g00002 170 MobiDBLite consensus disorder prediction 1 33 - -
Stsc232g00002 170 Coils Coil 85 120 - -
Stsc232g00002 170 FunFam Homeobox-leucine zipper protein HDG1 21 107 - -
Stsc232g00002 170 CDD homeodomain 31 92 IPR001356 GO:0003677
Stsc232g00002 170 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 156 IPR042160 -
Stsc232g00002 170 Gene3D - 23 109 - -
Stsc232g00002 170 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Stsc232g00002 170 SUPERFAMILY Homeodomain-like 26 97 IPR009057 -
Stsc232g00002 170 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Stsc232g00002 170 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Stsc232g00002 170 SMART HOX_1 30 95 IPR001356 GO:0003677
Stsc232g00002 170 Pfam Homeodomain 38 89 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc232g00002 Stsc-Chr232 7665 8537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc232g00002 32 153 Homeobox Transcription Factor Family AT1G73360 54.918 5.12e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc232g00002 Homeodomain 8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc232g00002 K09338 - gmx:100795075 189.504