Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2313g00001 ATGGGCCATTGCTGCAGCAAAAGCGTCGCCGTCGAAAACGAGGGCGCCTCCGCCAATCACCACGTCAAACCGCCGCACGTCTCGCCGGCGCCGGTCATAGTCGGGAACAATTCCGTGTCTGGCTTTAGCGATGCCTCAACGGCCACTCCTGGGAGGAGTACTCCGGCGAACTCTTTCTCTACAAGCCCCTTCACAAGTCCGCTTCCCCCGGGGGTGGCGCCGTCGCCGGCTGCTAAGACTCCAGGACGAAAGTTCCGTTGGCCTCTGCCGCCCCCGTCACCGGCGAAGCCGATCATGGCGGCGCTGCTGCGGAGGCAGGGGAAGACGAAGCCAAAAGATGGTCCCATACCGGAGGAGCAAGGTGAAGGTGGTGGGGGTGGTGCCGGCGCAGAAGGTGGAGAGAGGTCCCTTGATAAGAGCTTTGGTTATGGTAAGAACTTTGGTGCGAAGTTCGAACTAGGGAAGGAAGTGGGTCGAGGGCATTTTGGTCATACTTGCTGGGCTAAAGGGAAGAAGGGTGACCTTAAGGGTCAACCAGTTGCCGTTAAAATCATATCTAAAGCTAAGATGACTTCAGCAATAGCAATTGAAGATGTTAGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGTCATAAAAATTTGGTCAAGTTTCATGATGCATTTGAGGATGTCAATAATGTCTACATAGTAATGGAATTGTGCGAGGGTGGAGAACTACTTGACAGAATTCTAGATAGAGGTGGAAGATACACAGAGGATGATGCCAAAGCTATTATTTTACAAATTCTAGATGTAGTTGCCTTTTGCCATCTCCAAGG 821 0.5238 MGHCCSKSVAVENEGASANHHVKPPHVSPAPVIVGNNSVSGFSDASTATPGRSTPANSFSTSPFTSPLPPGVAPSPAAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKTKPKDGPIPEEQGEGGGGGAGAEGGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGDLKGQPVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFHDAFEDVNNVYIVMELCEGGELLDRILDRGGRYTEDDAKAIILQILDVVAFCHLQG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2313g00001 274 MobiDBLite consensus disorder prediction 107 137 - -
Stsc2313g00001 274 SUPERFAMILY Protein kinase-like (PK-like) 144 272 IPR011009 -
Stsc2313g00001 274 MobiDBLite consensus disorder prediction 43 66 - -
Stsc2313g00001 274 Gene3D Transferase(Phosphotransferase) domain 1 144 274 - -
Stsc2313g00001 274 ProSitePatterns Protein kinases ATP-binding region signature. 157 183 IPR017441 GO:0005524
Stsc2313g00001 274 FunFam CDPK-related kinase 1 144 239 - -
Stsc2313g00001 274 ProSiteProfiles Protein kinase domain profile. 151 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2313g00001 274 SMART serkin_6 151 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2313g00001 274 MobiDBLite consensus disorder prediction 43 94 - -
Stsc2313g00001 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 135 274 - -
Stsc2313g00001 274 Pfam Protein kinase domain 151 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2313g00001 Stsc-Chr2313 3797 8278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2313g00001 1 274 EF-hand Containing Proteins AT3G50530 55.017 3.15e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc2313g00001 Pkinase 3.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2313g00001 K13412 - gmx:100794478 428.713