Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc230g00007 ATGGTTGTGAATGAAGCAGACACAGAACCACCAAAGAAGAAGCCACTTTCTGAGAATGAGAAGAGGAAGAAGAAAATTGTTCCTGGGAGTTTAATGAAAGCGGTGGTGAGGCCTGGTGGCAGTGATTCTGGACCTTCAGATGGTGATCAGGTTATTTATCATTCCACAGTTCGAACGTTGGACGGAGTGCTTGTGGAATCTACAAGGTCTGACAATGGAGGCAAGGGCACACCAATAAGACATGTTTTAGGCAAAAGCAAGATGTTATTGGGCTTGCTGGAAGGAATCCCAACAATGTTGAAGGGCGAAGTGGCAATGTTCAAGATGGAGCCTCAGATGCACTATGGTGAGGATGATTGTCCTATTTCTGTTCCTGATAATTTTCCAAAGGAGGATGAACTTCATTTTGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGTTGTTACTGATGATTTGGGAGTTGTGAAAAAGGTTATTAATGAAGGGCAGGGTTGGGAATCTCCTCGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCAAAGACAGCTGCAGGGAAAGTTATTATGTCACATACAAAAGGAGAACCATACTTCTTTACATTTGGAAAATCAGAGGTGCCTAAAGGTCTTGAAATGGGAATAGGAACAATGACTCGGGAAGAGAAAGCTGTTATATATGTTACAAGTCAGTATTTAACTGAGTCTCCGCTGATGCCTGTAGTAGAAGATTATGATGAAGTCCAGTTTGAGGTGGAGCTCGTCCACTTTATTCAAGTGAGAGACATGCTTGGAGATGGGCGCCTAATAAAACGCCGCATTCGTGATGGCAAAGGTGACTTCCCAATGGATTGCCCTCTTCACGATAGTCTGCTTCGTGTACATTACAAGGGCATGATTGTCAATGAAGAAAATAGGGTATTCTATGATACAAGAGTTGATAATGATAGTGAGCCTTTGGAGTTTTCCTCCGGAGAAGGTCTGGTGCCAGAGGGATTTGAAATGAGTGTTCGTCTGATGCTTCCTGGAGAGATAGCTCTTGTCTCGTGCCCCCCTGACTATGCATATGATAAGTTTCCAAGGCCAGCAAATGTCCCTGAGGGTGCTCATATTCAATGGGAGATTGAACTTCTTGGTTTTGAAATGCCAAAGGACTGGACTGGATTGGACTTTAGTAGTATAATGAATGAGGCCGAGAAGATCAGAAACACGGGTAACAGGCTATTCAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTGCGAGAGTTTAATCATGTTAATCCACAAGATGACGAAGAAGGAAAAGTATTTGTAGACACGCGGAATTTGTTACACCTTAACGTTGCCGCATGCTATCTGAAAGTTGGAGAATGCAGAAAGTCCATTGAGACTTGCAACAAGGTTTTGGAAGCAAAGCCTGCACATGTCAAGGGTTTATATCGTCGTGGAATGGCCTACATGGCTAATGGAGATTTTGAAGAAGCAAGGAATGATTTCAAAATGATGATGAAAGTTGACAAGTCGGCTGAACCTGATGCAACTGCAGCTCTTTCAAAATTGAAGCAGAAGGAACAGGAAGTTGAGAAGAAAGCTCGGAAACAATTTAAAGGGCTTTTCGACAAGAAGCCTGGAGAAATTTCAGAAGCCAAAGTTGATGAAGATGGAAATCCAAGTACAAGTGAAAACCAGCAGGACAGTGAAGAAAATGGTGACGCTGATGGAACAAATTCAGAGGATTCACATGAAGCCGCACCCGACCCACGTCAAAGGAGTTGGTTCTCTCTCTTTTGGCCCACTGGCAAAAGAATTTTTGAGTCTCTTGGTCTCCAAAGATGTACCATACTGTGA 1863 0.4273 MVVNEADTEPPKKKPLSENEKRKKKIVPGSLMKAVVRPGGSDSGPSDGDQVIYHSTVRTLDGVLVESTRSDNGGKGTPIRHVLGKSKMLLGLLEGIPTMLKGEVAMFKMEPQMHYGEDDCPISVPDNFPKEDELHFEIELIEFFKAKVVTDDLGVVKKVINEGQGWESPREPYEVKAWISAKTAAGKVIMSHTKGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTESPLMPVVEDYDEVQFEVELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGMIVNEENRVFYDTRVDNDSEPLEFSSGEGLVPEGFEMSVRLMLPGEIALVSCPPDYAYDKFPRPANVPEGAHIQWEIELLGFEMPKDWTGLDFSSIMNEAEKIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFVDTRNLLHLNVAACYLKVGECRKSIETCNKVLEAKPAHVKGLYRRGMAYMANGDFEEARNDFKMMMKVDKSAEPDATAALSKLKQKEQEVEKKARKQFKGLFDKKPGEISEAKVDEDGNPSTSENQQDSEENGDADGTNSEDSHEAAPDPRQRSWFSLFWPTGKRIFESLGLQRCTIL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc230g00007 620 Gene3D - 147 260 IPR046357 GO:0003755
Stsc230g00007 620 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 191 258 IPR001179 GO:0003755
Stsc230g00007 620 MobiDBLite consensus disorder prediction 7 27 - -
Stsc230g00007 620 FunFam Peptidylprolyl isomerase 5 147 - -
Stsc230g00007 620 Gene3D Tetratricopeptide repeat domain 392 546 IPR011990 GO:0005515
Stsc230g00007 620 MobiDBLite consensus disorder prediction 1 49 - -
Stsc230g00007 620 FunFam Peptidylprolyl isomerase 148 258 - -
Stsc230g00007 620 SUPERFAMILY TPR-like 396 538 IPR011990 GO:0005515
Stsc230g00007 620 MobiDBLite consensus disorder prediction 548 596 - -
Stsc230g00007 620 SUPERFAMILY FKBP-like 147 257 - -
Stsc230g00007 620 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 381 IPR001179 GO:0003755
Stsc230g00007 620 Coils Coil 518 538 - -
Stsc230g00007 620 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
Stsc230g00007 620 SUPERFAMILY FKBP-like 9 147 - -
Stsc230g00007 620 PANTHER INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 147 259 - -
Stsc230g00007 620 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 255 IPR001179 GO:0003755
Stsc230g00007 620 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 290 378 IPR001179 GO:0003755
Stsc230g00007 620 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 45 141 IPR001179 GO:0003755
Stsc230g00007 620 Gene3D - 3 146 IPR046357 GO:0003755
Stsc230g00007 620 FunFam Peptidylprolyl isomerase 259 383 - -
Stsc230g00007 620 SUPERFAMILY FKBP-like 263 386 - -
Stsc230g00007 620 SMART tpr_5 398 431 IPR019734 GO:0005515
Stsc230g00007 620 SMART tpr_5 481 514 IPR019734 GO:0005515
Stsc230g00007 620 SMART tpr_5 447 480 IPR019734 GO:0005515
Stsc230g00007 620 Pfam Tetratricopeptide repeat 482 505 IPR019734 GO:0005515
Stsc230g00007 620 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 144 IPR001179 GO:0003755
Stsc230g00007 620 Gene3D - 261 387 IPR046357 GO:0003755
Stsc230g00007 620 FunFam Peptidylprolyl isomerase 386 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc230g00007 Stsc-Chr230 53521 65055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc230g00007 26 546 Calmodulin-binding Proteins AT5G48570 30.320 4.57e-65 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc230g00007 - - gmx:100527937 1076.62