Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc230g00002 ATGCGCCTCTTCCTCTTCCCCTTCCTCTTCTTCCTTCTCCGCCTTCACCTCACCGCTCACTCCGCCCACATCTCCGAGCGCCGTGCCCTCCTCTCCTTCAAAGCCGCCTGCATTACCTCCGACCCCACCTCCGCCCTCTTCTCCTGGTCCCCCACCTCCCCCGACGACCACTGCACATGGCGCGGCGTTTCCTGCGACCACCGCCTCCGCCACGTCACCTCCCTCAACCTCTCTTCCTTCTCCCTCACCGGCACTCTCCAAGGCGACCACCTCTCCCTCCTCCCCTTCCTCACCAACCTCTCCCTCTCGGATAACAAACTCTCCGGCCCCCTTCCCATTTCTCTCTCATCCCTCACAAACCTCCGCTTCCTCAACCTCTCTAACAACATCTTCAACGGAACCTTCCCTAACCAACTTTCTTTTCTTCACACTCTTGAGGTTCTTGACCTTTACAATAACAACATGACCGGTCCTCTTCCCCTCGCCGTCACTGACATGACTCAGCTTCGCCACTTGCACCTCGGTGGAAACTTCTTCTCCGGCGAGATTCCTCCGGAGTACGGCAAATGGCAGAAGCTCCAGTATCTTGCGCTTTCCGGCAACGAGCTCGTCGGAAAAATCCCGCCGGAGATTGGAAACCTTAGCTCCCTCCAGGAGCTTTATGTAGGCTACTACAACACTTACGACGGCGGAATACCGCCGGAGATCGGAAACTTGTCTGAGCTTGTCAGGCTCGACGCCGCATACTGTGGACTCTCCGGCGAGATTCCGCCGGAGATAGGGAGGCTTCAGAAGCTCGACACACTCTTTCTCCAGGTGAATGCGCTTTCTGGCTCTCTAATACCGGAGCTCGGGAGCCTCAAAAGCCTGAAATCCATGGATTTATCGAACAACATGCTCGCCGGCGAGGTTCCGGCGAGCTTTGCGGCGCTGGAGAACATAACTCTCTTGAACCTCTTCCGCAATAAGCTCCATGGTGAGATACCGGAGTTCATCGGCGAGCTTCCGTCACTGGAGGTGCTTCAGCTGTGGGACAACAACTTCACCGGAAACATTCCTCAGAATTTGGGGAAGAACGGCAGGCTCACGATCGTCGACCTTTCGTCGAACAAGCTGACCGGAACTTTGCCACCGTTAATGTGTTCCGGTAACCGTCTTCAGACACTGATAACTCTCGGTAACTTCCTCTTTGGTCCAATCCCTGGTTCACTCGGAAAGTGTGAGTCTCTTAGTCGGGTGAGAATGGGTGATAATTTCTTGAACGGTTCAATCCCTAAGGGACTCTTTGGGCTTCCCAAACTCACACAGGTTGAGCTTCAGGATAATCTTCTCACCGGAGAGTTTCCTGTTACTGCTTCCGTTGCACCGAACTTGGGGCAAATCACTCTTTCCAATAACAAGCTTTCAGGGCCGTTGCCGCCGTCCATTGGGAACTTCTCTGGCATGCAGAAGCTCCTACTCGACGGGAACCGGTTCTCGGGCCGGATCCCGCCGGAGATTGGTAGGCTACAGCAGCTCTCCAAGATGGATTTTAGCAATAATAAGTTCTCCGGTCCGGTTGCCCCGGAGATCAGCCGGTGCAAGTTGTTGACATTCGTTGATCTCAGCCGGAACGAGCTCTCCGGCGAGGTTCCGAATGAGATCACCGGAATGCGGATACTGAACTACTTGAACCTTTCAAGGAACCACTTGGTTGGTCCAATTCCAGGTTCTATTGCTTCCATGCAGAGTTTAACATCAGTGGATTTCTCTTACAACAATCTCTCTGGTTTAGTTCCGGGCACTGGCCAATTCAGCTATTTCAACTATACCTCTTTCTTGGGGAACCCTGAACTCTGCGGCCCTTATTTGGGTCCTTGCAAAGACGGTGTTGTCAATGGCCCTCGCCAACCACATGTTAAGGGTCCATTATCTTCTTCCTTGAAGCTATTGCTGGTTATTGGCCTACTTGTTTGCTCCATCCTGTTTGCTGTCGCGGCGATCTTCAAGGCACGGTCACTGAAGAAGGCGAGCGAGGCGCGTGCCTGGAAGCTAACGGCGTTCCAGCGATTGGACTTCACTGTGGACGATGTTCTGGATTGTTTGAAGGAGGATAACATCATTGGAAAAGGAGGTGCTGGAATTGTGTACAAAGGGGTCATGGCGAATGGGGATCAAGTTGCTGTAAAGAGATTACCGGCTATGAGTAGAGGATCATCCCATGATCATGGTTTCAATGCGGAGATTCAAACTCTGGGGAGAATTCGACACAGGCACATTGTTAGGTTGTTGGGGTTCTGTTCGAACCACGAGACGAATCTTCTTGTGTATGAGTACATGCCTAATGGAAGCTTGGGTGAGGTTCTTCATGGGAAGAAAGGGGGTCACCTGCATTGGGACACAAGGTACAAGATTGCTGTGGAGGCTGCAAAGGGGCTTTGTTACTTGCATCATGATTGTTCCCCGCTGATCGTTCACCGCGATGTTAAGTCGAACAATATCCTTCTTGATTCCAACCTTGAAGCCCATGTTGCTGATTTTGGGCTAGCCAAGTTCCTCCAAGATTCTGGAACATCTGAATGCATGTCTGCTATTGCCGGGTCATATGGATACATAGCTCCAGAGTATGCCTACACTTTGAAAGTCGATGAGAAGAGCGATGTGTACAGCTTTGGTGTTGTTCTTTTGGAGCTTGTAACCGGAAAGAAACCGGTTGGTGAGTTCGGCGACGGTGTAGACATTGTGCAATGGGTGAGGAAAATGACAGACTCAAACAAGGAAGGAGTGCTTAAGGTTCTTGATCCAAGGCTTCCCTCAGTTCCCCTCCACGAGGTGATGCACATTTTCTATGTTGCCATGCTGTGTGTCGAAGAACAAGCCGTAGAGCGACCGACCATGCGCGAAGTGGTTCAAATTCTCACCGAGCTTCCAAAGCCACCAAGCTCAAAGCAGCTGGGAGATTCAACAATCACCGAGTCCTCATCATTGTCTTCATCAAACAGCTTAGAGTCTCCGACCGCCACATCATCGAAAGAGCCTACTACTAAAGATAATCAAACCCCTCCTAAGTCACCACCACCAGATCTTCTTAGCATCTAA 3078 0.5166 MRLFLFPFLFFLLRLHLTAHSAHISERRALLSFKAACITSDPTSALFSWSPTSPDDHCTWRGVSCDHRLRHVTSLNLSSFSLTGTLQGDHLSLLPFLTNLSLSDNKLSGPLPISLSSLTNLRFLNLSNNIFNGTFPNQLSFLHTLEVLDLYNNNMTGPLPLAVTDMTQLRHLHLGGNFFSGEIPPEYGKWQKLQYLALSGNELVGKIPPEIGNLSSLQELYVGYYNTYDGGIPPEIGNLSELVRLDAAYCGLSGEIPPEIGRLQKLDTLFLQVNALSGSLIPELGSLKSLKSMDLSNNMLAGEVPASFAALENITLLNLFRNKLHGEIPEFIGELPSLEVLQLWDNNFTGNIPQNLGKNGRLTIVDLSSNKLTGTLPPLMCSGNRLQTLITLGNFLFGPIPGSLGKCESLSRVRMGDNFLNGSIPKGLFGLPKLTQVELQDNLLTGEFPVTASVAPNLGQITLSNNKLSGPLPPSIGNFSGMQKLLLDGNRFSGRIPPEIGRLQQLSKMDFSNNKFSGPVAPEISRCKLLTFVDLSRNELSGEVPNEITGMRILNYLNLSRNHLVGPIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVVNGPRQPHVKGPLSSSLKLLLVIGLLVCSILFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGVMANGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNLEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGKKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHIFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQLGDSTITESSSLSSSNSLESPTATSSKEPTTKDNQTPPKSPPPDLLSI 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc230g00002 1025 Gene3D Phosphorylase Kinase; domain 1 661 772 - -
Stsc230g00002 1025 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 88 331 - -
Stsc230g00002 1025 Gene3D Ribonuclease Inhibitor 530 620 IPR032675 -
Stsc230g00002 1025 Gene3D Ribonuclease Inhibitor 226 382 IPR032675 -
Stsc230g00002 1025 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 664 772 - -
Stsc230g00002 1025 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 773 983 - -
Stsc230g00002 1025 Pfam Protein tyrosine and serine/threonine kinase 697 966 IPR001245 GO:0004672|GO:0006468
Stsc230g00002 1025 SMART serkin_6 695 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc230g00002 1025 SUPERFAMILY L domain-like 360 620 - -
Stsc230g00002 1025 MobiDBLite consensus disorder prediction 970 1025 - -
Stsc230g00002 1025 SMART LRR_typ_2 166 190 IPR003591 -
Stsc230g00002 1025 SMART LRR_typ_2 575 598 IPR003591 -
Stsc230g00002 1025 SMART LRR_typ_2 335 359 IPR003591 -
Stsc230g00002 1025 SMART LRR_typ_2 479 503 IPR003591 -
Stsc230g00002 1025 SMART LRR_typ_2 287 310 IPR003591 -
Stsc230g00002 1025 ProSiteProfiles Protein kinase domain profile. 695 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc230g00002 1025 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 225 967 - -
Stsc230g00002 1025 SUPERFAMILY RNI-like 74 397 - -
Stsc230g00002 1025 Gene3D Ribonuclease Inhibitor 383 452 IPR032675 -
Stsc230g00002 1025 Gene3D Ribonuclease Inhibitor 453 529 IPR032675 -
Stsc230g00002 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Stsc230g00002 1025 Gene3D Transferase(Phosphotransferase) domain 1 773 986 - -
Stsc230g00002 1025 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 339 624 - -
Stsc230g00002 1025 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Stsc230g00002 1025 MobiDBLite consensus disorder prediction 970 1011 - -
Stsc230g00002 1025 SUPERFAMILY Protein kinase-like (PK-like) 688 966 IPR011009 -
Stsc230g00002 1025 Gene3D Ribonuclease Inhibitor 23 225 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc230g00002 Stsc-Chr230 1517 5563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc230g00002 16 998 Receptor kinase-like Gene Family AT5G65700 79.070 0.0 1567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc230g00002 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc230g00002 - - gmx:100499646 1699.87