Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc230g00002 | ATGCGCCTCTTCCTCTTCCCCTTCCTCTTCTTCCTTCTCCGCCTTCACCTCACCGCTCACTCCGCCCACATCTCCGAGCGCCGTGCCCTCCTCTCCTTCAAAGCCGCCTGCATTACCTCCGACCCCACCTCCGCCCTCTTCTCCTGGTCCCCCACCTCCCCCGACGACCACTGCACATGGCGCGGCGTTTCCTGCGACCACCGCCTCCGCCACGTCACCTCCCTCAACCTCTCTTCCTTCTCCCTCACCGGCACTCTCCAAGGCGACCACCTCTCCCTCCTCCCCTTCCTCACCAACCTCTCCCTCTCGGATAACAAACTCTCCGGCCCCCTTCCCATTTCTCTCTCATCCCTCACAAACCTCCGCTTCCTCAACCTCTCTAACAACATCTTCAACGGAACCTTCCCTAACCAACTTTCTTTTCTTCACACTCTTGAGGTTCTTGACCTTTACAATAACAACATGACCGGTCCTCTTCCCCTCGCCGTCACTGACATGACTCAGCTTCGCCACTTGCACCTCGGTGGAAACTTCTTCTCCGGCGAGATTCCTCCGGAGTACGGCAAATGGCAGAAGCTCCAGTATCTTGCGCTTTCCGGCAACGAGCTCGTCGGAAAAATCCCGCCGGAGATTGGAAACCTTAGCTCCCTCCAGGAGCTTTATGTAGGCTACTACAACACTTACGACGGCGGAATACCGCCGGAGATCGGAAACTTGTCTGAGCTTGTCAGGCTCGACGCCGCATACTGTGGACTCTCCGGCGAGATTCCGCCGGAGATAGGGAGGCTTCAGAAGCTCGACACACTCTTTCTCCAGGTGAATGCGCTTTCTGGCTCTCTAATACCGGAGCTCGGGAGCCTCAAAAGCCTGAAATCCATGGATTTATCGAACAACATGCTCGCCGGCGAGGTTCCGGCGAGCTTTGCGGCGCTGGAGAACATAACTCTCTTGAACCTCTTCCGCAATAAGCTCCATGGTGAGATACCGGAGTTCATCGGCGAGCTTCCGTCACTGGAGGTGCTTCAGCTGTGGGACAACAACTTCACCGGAAACATTCCTCAGAATTTGGGGAAGAACGGCAGGCTCACGATCGTCGACCTTTCGTCGAACAAGCTGACCGGAACTTTGCCACCGTTAATGTGTTCCGGTAACCGTCTTCAGACACTGATAACTCTCGGTAACTTCCTCTTTGGTCCAATCCCTGGTTCACTCGGAAAGTGTGAGTCTCTTAGTCGGGTGAGAATGGGTGATAATTTCTTGAACGGTTCAATCCCTAAGGGACTCTTTGGGCTTCCCAAACTCACACAGGTTGAGCTTCAGGATAATCTTCTCACCGGAGAGTTTCCTGTTACTGCTTCCGTTGCACCGAACTTGGGGCAAATCACTCTTTCCAATAACAAGCTTTCAGGGCCGTTGCCGCCGTCCATTGGGAACTTCTCTGGCATGCAGAAGCTCCTACTCGACGGGAACCGGTTCTCGGGCCGGATCCCGCCGGAGATTGGTAGGCTACAGCAGCTCTCCAAGATGGATTTTAGCAATAATAAGTTCTCCGGTCCGGTTGCCCCGGAGATCAGCCGGTGCAAGTTGTTGACATTCGTTGATCTCAGCCGGAACGAGCTCTCCGGCGAGGTTCCGAATGAGATCACCGGAATGCGGATACTGAACTACTTGAACCTTTCAAGGAACCACTTGGTTGGTCCAATTCCAGGTTCTATTGCTTCCATGCAGAGTTTAACATCAGTGGATTTCTCTTACAACAATCTCTCTGGTTTAGTTCCGGGCACTGGCCAATTCAGCTATTTCAACTATACCTCTTTCTTGGGGAACCCTGAACTCTGCGGCCCTTATTTGGGTCCTTGCAAAGACGGTGTTGTCAATGGCCCTCGCCAACCACATGTTAAGGGTCCATTATCTTCTTCCTTGAAGCTATTGCTGGTTATTGGCCTACTTGTTTGCTCCATCCTGTTTGCTGTCGCGGCGATCTTCAAGGCACGGTCACTGAAGAAGGCGAGCGAGGCGCGTGCCTGGAAGCTAACGGCGTTCCAGCGATTGGACTTCACTGTGGACGATGTTCTGGATTGTTTGAAGGAGGATAACATCATTGGAAAAGGAGGTGCTGGAATTGTGTACAAAGGGGTCATGGCGAATGGGGATCAAGTTGCTGTAAAGAGATTACCGGCTATGAGTAGAGGATCATCCCATGATCATGGTTTCAATGCGGAGATTCAAACTCTGGGGAGAATTCGACACAGGCACATTGTTAGGTTGTTGGGGTTCTGTTCGAACCACGAGACGAATCTTCTTGTGTATGAGTACATGCCTAATGGAAGCTTGGGTGAGGTTCTTCATGGGAAGAAAGGGGGTCACCTGCATTGGGACACAAGGTACAAGATTGCTGTGGAGGCTGCAAAGGGGCTTTGTTACTTGCATCATGATTGTTCCCCGCTGATCGTTCACCGCGATGTTAAGTCGAACAATATCCTTCTTGATTCCAACCTTGAAGCCCATGTTGCTGATTTTGGGCTAGCCAAGTTCCTCCAAGATTCTGGAACATCTGAATGCATGTCTGCTATTGCCGGGTCATATGGATACATAGCTCCAGAGTATGCCTACACTTTGAAAGTCGATGAGAAGAGCGATGTGTACAGCTTTGGTGTTGTTCTTTTGGAGCTTGTAACCGGAAAGAAACCGGTTGGTGAGTTCGGCGACGGTGTAGACATTGTGCAATGGGTGAGGAAAATGACAGACTCAAACAAGGAAGGAGTGCTTAAGGTTCTTGATCCAAGGCTTCCCTCAGTTCCCCTCCACGAGGTGATGCACATTTTCTATGTTGCCATGCTGTGTGTCGAAGAACAAGCCGTAGAGCGACCGACCATGCGCGAAGTGGTTCAAATTCTCACCGAGCTTCCAAAGCCACCAAGCTCAAAGCAGCTGGGAGATTCAACAATCACCGAGTCCTCATCATTGTCTTCATCAAACAGCTTAGAGTCTCCGACCGCCACATCATCGAAAGAGCCTACTACTAAAGATAATCAAACCCCTCCTAAGTCACCACCACCAGATCTTCTTAGCATCTAA | 3078 | 0.5166 | MRLFLFPFLFFLLRLHLTAHSAHISERRALLSFKAACITSDPTSALFSWSPTSPDDHCTWRGVSCDHRLRHVTSLNLSSFSLTGTLQGDHLSLLPFLTNLSLSDNKLSGPLPISLSSLTNLRFLNLSNNIFNGTFPNQLSFLHTLEVLDLYNNNMTGPLPLAVTDMTQLRHLHLGGNFFSGEIPPEYGKWQKLQYLALSGNELVGKIPPEIGNLSSLQELYVGYYNTYDGGIPPEIGNLSELVRLDAAYCGLSGEIPPEIGRLQKLDTLFLQVNALSGSLIPELGSLKSLKSMDLSNNMLAGEVPASFAALENITLLNLFRNKLHGEIPEFIGELPSLEVLQLWDNNFTGNIPQNLGKNGRLTIVDLSSNKLTGTLPPLMCSGNRLQTLITLGNFLFGPIPGSLGKCESLSRVRMGDNFLNGSIPKGLFGLPKLTQVELQDNLLTGEFPVTASVAPNLGQITLSNNKLSGPLPPSIGNFSGMQKLLLDGNRFSGRIPPEIGRLQQLSKMDFSNNKFSGPVAPEISRCKLLTFVDLSRNELSGEVPNEITGMRILNYLNLSRNHLVGPIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVVNGPRQPHVKGPLSSSLKLLLVIGLLVCSILFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGVMANGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNLEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGKKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHIFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQLGDSTITESSSLSSSNSLESPTATSSKEPTTKDNQTPPKSPPPDLLSI | 1025 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc230g00002 | 1025 | Gene3D | Phosphorylase Kinase; domain 1 | 661 | 772 | - | - | |
Stsc230g00002 | 1025 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | 88 | 331 | - | - | |
Stsc230g00002 | 1025 | Gene3D | Ribonuclease Inhibitor | 530 | 620 | IPR032675 | - | |
Stsc230g00002 | 1025 | Gene3D | Ribonuclease Inhibitor | 226 | 382 | IPR032675 | - | |
Stsc230g00002 | 1025 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 | 664 | 772 | - | - | |
Stsc230g00002 | 1025 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase | 773 | 983 | - | - | |
Stsc230g00002 | 1025 | Pfam | Protein tyrosine and serine/threonine kinase | 697 | 966 | IPR001245 | GO:0004672|GO:0006468 | |
Stsc230g00002 | 1025 | SMART | serkin_6 | 695 | 965 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc230g00002 | 1025 | SUPERFAMILY | L domain-like | 360 | 620 | - | - | |
Stsc230g00002 | 1025 | MobiDBLite | consensus disorder prediction | 970 | 1025 | - | - | |
Stsc230g00002 | 1025 | SMART | LRR_typ_2 | 166 | 190 | IPR003591 | - | |
Stsc230g00002 | 1025 | SMART | LRR_typ_2 | 575 | 598 | IPR003591 | - | |
Stsc230g00002 | 1025 | SMART | LRR_typ_2 | 335 | 359 | IPR003591 | - | |
Stsc230g00002 | 1025 | SMART | LRR_typ_2 | 479 | 503 | IPR003591 | - | |
Stsc230g00002 | 1025 | SMART | LRR_typ_2 | 287 | 310 | IPR003591 | - | |
Stsc230g00002 | 1025 | ProSiteProfiles | Protein kinase domain profile. | 695 | 969 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Stsc230g00002 | 1025 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 225 | 967 | - | - | |
Stsc230g00002 | 1025 | SUPERFAMILY | RNI-like | 74 | 397 | - | - | |
Stsc230g00002 | 1025 | Gene3D | Ribonuclease Inhibitor | 383 | 452 | IPR032675 | - | |
Stsc230g00002 | 1025 | Gene3D | Ribonuclease Inhibitor | 453 | 529 | IPR032675 | - | |
Stsc230g00002 | 1025 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 817 | 829 | IPR008271 | GO:0004672|GO:0006468 | |
Stsc230g00002 | 1025 | Gene3D | Transferase(Phosphotransferase) domain 1 | 773 | 986 | - | - | |
Stsc230g00002 | 1025 | FunFam | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 | 339 | 624 | - | - | |
Stsc230g00002 | 1025 | Pfam | Leucine rich repeat N-terminal domain | 25 | 66 | IPR013210 | - | |
Stsc230g00002 | 1025 | MobiDBLite | consensus disorder prediction | 970 | 1011 | - | - | |
Stsc230g00002 | 1025 | SUPERFAMILY | Protein kinase-like (PK-like) | 688 | 966 | IPR011009 | - | |
Stsc230g00002 | 1025 | Gene3D | Ribonuclease Inhibitor | 23 | 225 | IPR032675 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc230g00002 | Stsc-Chr230 | 1517 | 5563 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc230g00002 | 16 | 998 | Receptor kinase-like Gene Family | AT5G65700 | 79.070 | 0.0 | 1567 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Stsc230g00002 | PK_Tyr_Ser-Thr | 2.4e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc230g00002 | - | - | gmx:100499646 | 1699.87 |