Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc22g00029 ATGGATCCTCCACTCATTAACGACTCTACATTCTCTGCTGCCAATCCTTCATCCTACACTCTTTCCGAGATTTGGCCCTTCTCCACCTCAGGCCTCGGTCTCCGAATGCCCAATTTCGGAGGAGAAGACGGTAATTTCCCACCCTTTCAAGACTCCTCCTCGAATAATCATAACCATAACCACTCCCCCCTCCTCCGAGACGCTTCCGCCGATGAATCCACCGTCACCGACCTCAGCACCGCCGCAATTGCCACCCGCAATCACCGCAAGAGGAAGAACTCATCCGTTTCCGCCGCGGCCACAGCCGCCTCCGAGGACGACTCCTCCAGGATGGTTTCCACAAGCTCCGCCAACGACTTGAATGATTCTGACGTTAAAAGGATAAAACTAGGAGGATCAATCAACGAAAATGATGCTTCAAAAATGGAAGTAGAAGCAAGTTCAGTAGCTGGCGACAAGTCGGCCCAACAAAGCAGCAAGTCCTGTGAGCCACCTAAACAAGATTATATCCACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAGAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAATTGGTAAAGCTCTTGTCCTGGACGAAATCATCAATTATATTCAGTCACTGCAGCGTCAAGTTGAGTTCCTGTCAATGAAGCTTGAGGCAGTTAATTCAAGATTAAGTGTGAACCCTACAATTGATGGGTTCTCTTCAAAAGATGTTGCCACTCAGCCATTTGACATTGCTGGAATGATAATCGGATCACCCACATCTAGGGGCTATGCTCAGGGATCACAACTTGGATGGCTGCATATGCAGATAGGTAGTGATTTCGGGAGAACAACATAA 906 0.4812 MDPPLINDSTFSAANPSSYTLSEIWPFSTSGLGLRMPNFGGEDGNFPPFQDSSSNNHNHNHSPLLRDASADESTVTDLSTAAIATRNHRKRKNSSVSAAATAASEDDSSRMVSTSSANDLNDSDVKRIKLGGSINENDASKMEVEASSVAGDKSAQQSSKSCEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSVNPTIDGFSSKDVATQPFDIAGMIIGSPTSRGYAQGSQLGWLHMQIGSDFGRTT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc22g00029 301 MobiDBLite consensus disorder prediction 150 164 - -
Stsc22g00029 301 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 69 269 IPR024097 GO:0006355
Stsc22g00029 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 228 IPR011598 GO:0046983
Stsc22g00029 301 Gene3D - 175 251 IPR036638 GO:0046983
Stsc22g00029 301 FunFam Basic helix-loop-helix transcription factor 175 247 - -
Stsc22g00029 301 MobiDBLite consensus disorder prediction 139 167 - -
Stsc22g00029 301 MobiDBLite consensus disorder prediction 47 83 - -
Stsc22g00029 301 CDD bHLH_AtBPE_like 168 253 - -
Stsc22g00029 301 SMART finulus 184 234 IPR011598 GO:0046983
Stsc22g00029 301 MobiDBLite consensus disorder prediction 36 119 - -
Stsc22g00029 301 MobiDBLite consensus disorder prediction 94 119 - -
Stsc22g00029 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 246 IPR036638 GO:0046983
Stsc22g00029 301 Coils Coil 225 245 - -
Stsc22g00029 301 Pfam Helix-loop-helix DNA-binding domain 182 229 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc22g00029 Stsc-Chr22 215858 220325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc22g00029 1 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 53.722 5.89e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc22g00029 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc22g00029 - - cave:132175693 358.221