Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc22g00015 ATGTGTTTTGCGTTTGATGAGGCCATTCACTCAGGGCTCAAGAGGTGTGGAAAGAGTTGCAGGCTTCGGTGGACCAATAATTATCTCAGACCTGATCTTAAGCATGACACATTTACATCCCAAGAAGAAGATCTTATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTTCATAATAGCCCAACAACTCCCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACAAAGCTGAGAAAGAAGCTCTCTCAAATGGGAATAGACCCTGTTACTCATAAGCCCTTCTCAAAGCTGATTGCTGACTATGGAAACATTGAGGGTTCTCATGGCCAAAAACAACCAACTACACAAACTAGCTCTATCAACAACAAAGACTTCAAGAAAAGTTCAATTCTCTTAAACTCAGAGCAATACCAAACCCTGAAGCCACAGGGGTTTATTACTAGAATCACCAATGATAACAATAATAATAATTGCCAACAGCAAACATTGCAAATGGAACCAATTACTGATGAAACCAATAATCTTTCATTTAACCACTTAATGGATCTTACAATGACGCCAACAGTTATAGGTTCAACAAATTGCTGCATGGATAGAGAGAATCATGAGACCATTACTTCTTCGTCTTCTTCAACTTGTTCCACTCCGGCGCAAGAAGCCTCGCCGGTGGCATCACATTTCTGTTGGAATGACTTCCTTCTAGAAGACGCCTTTGTGCCAGCTACTGCTGATAACAATAATGATCAAGAAATGGTGGCGGCTGGTTTCTTGTCGAAGGAGTTACTTGTATGCCGAATTGAGAATGTATCGAGACTAAGTTGGAGCAAGAAAGAAGCGAGATCACAGCAAGAAGCAATTAGCAATAATGATTTTGAGCTCTCATCATCTTTGTCATCTTCATGTGAAACTTCGTTTGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTTCTTAGTTTTCCTCACCTTATGGAGGAACCATCTCACTACTAA 1002 0.4052 MCFAFDEAIHSGLKRCGKSCRLRWTNNYLRPDLKHDTFTSQEEDLIIKLHAAIGSRWFIIAQQLPGRTDNDVKNYWNTKLRKKLSQMGIDPVTHKPFSKLIADYGNIEGSHGQKQPTTQTSSINNKDFKKSSILLNSEQYQTLKPQGFITRITNDNNNNNCQQQTLQMEPITDETNNLSFNHLMDLTMTPTVIGSTNCCMDRENHETITSSSSSTCSTPAQEASPVASHFCWNDFLLEDAFVPATADNNNDQEMVAAGFLSKELLVCRIENVSRLSWSKKEARSQQEAISNNDFELSSSLSSSCETSFVEAMLDQENEMFLSFPHLMEEPSHY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc22g00015 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 84 IPR017930 -
Stsc22g00015 333 SUPERFAMILY Homeodomain-like 14 88 IPR009057 -
Stsc22g00015 333 PANTHER F14D16.11-RELATED 11 333 - -
Stsc22g00015 333 FunFam Os07g0634900 protein 37 96 - -
Stsc22g00015 333 CDD SANT 37 80 IPR001005 -
Stsc22g00015 333 SMART sant 34 82 IPR001005 -
Stsc22g00015 333 Pfam Myb-like DNA-binding domain 37 78 IPR001005 -
Stsc22g00015 333 ProSiteProfiles Myb-like domain profile. 30 80 IPR001005 -
Stsc22g00015 333 Gene3D - 37 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc22g00015 Stsc-Chr22 127217 132147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc22g00015 11 329 MYB Transcription Factor Family AT3G28470 39.210 5.20e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc22g00015 Myb_DNA-binding 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc22g00015 K09422 - qsa:O6P43_030939 286.189