Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2290g00002 ATGACTGCAAAGGCAGAGATGGAGTTCGCAGTTGAAGTGGAAGTACTTGGAAGGGTTAGACATAAGAATTTGTTAGGTTTGAGGGGTTTCTATGCTGGTGGAGATGAAAGGTTAATTGTTTATGATTTCATGCCTAATCAAAGCTTGCTCACACATTTGCACGGTCACCTTTCTTCTAATTGTCTCTTAGATTGGCCTAAACGAATGAACATCGCAATTGGTGCAGCTGAAGGCTTAGCGTATTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAAGCAAGCAATGTTTTGTTAGACCTTGAATTCCAAGCTAAGGTAGCTGATTTTGGTTTCGCAAAGCTGATACCAGAGGGTGTAAGCCATCTAACAACCAGGGTTAAAGGAACACTAGGATATCTGGCGCCAGAATATGCCATGTGGGGTAAAGTCTCAGAGAGTTGTGATGTTTACAGCTTTGGGATTCTTCTTTTGGAGATTGTGAGTGCCAAGAAACCTATTGAGAAGCTACCCGGTGGAGTGAAAAGGGATATTGTTCAATGGGTGACACCTTACTTCCAGAAGGGTGCATTCAATCACATTGCGGATTCGAAGCTGAAGGGGAAGTTTGATTTGGATCAGTTGAAATCTGTGGTGATGATAGCTCTGAGATGCACGGATGGTAGCCCTGAGAAGAGGCCTAGCATGGAAGAGGTTGTGGATTGGCTTAAGGGTGCAGCTGGGAAGAGTAGAAGAAGAGAGGTTACTACTCCTCTAAGCTTGGGTTACAAGAACAATGGTGATGATGAACAGGATGACGATGATTACGGAGAGATTAGACCATACCCATCCAAATTGAAAATGACAACCGATAGTGATAGGCATAAGAGAAGATGA 885 0.4328 MTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDFMPNQSLLTHLHGHLSSNCLLDWPKRMNIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDLEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLPGGVKRDIVQWVTPYFQKGAFNHIADSKLKGKFDLDQLKSVVMIALRCTDGSPEKRPSMEEVVDWLKGAAGKSRRREVTTPLSLGYKNNGDDEQDDDDYGEIRPYPSKLKMTTDSDRHKRR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2290g00002 294 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2290g00002 294 MobiDBLite consensus disorder prediction 273 287 - -
Stsc2290g00002 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 90 102 IPR008271 GO:0004672|GO:0006468
Stsc2290g00002 294 FunFam PTI1-like tyrosine-protein kinase At3g15890 44 254 - -
Stsc2290g00002 294 Pfam Protein tyrosine and serine/threonine kinase 4 237 IPR001245 GO:0004672|GO:0006468
Stsc2290g00002 294 MobiDBLite consensus disorder prediction 244 294 - -
Stsc2290g00002 294 SUPERFAMILY Protein kinase-like (PK-like) 7 248 IPR011009 -
Stsc2290g00002 294 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2290g00002 294 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 4 258 - -
Stsc2290g00002 294 Gene3D Phosphorylase Kinase; domain 1 1 44 - -
Stsc2290g00002 294 Gene3D Transferase(Phosphotransferase) domain 1 45 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2290g00002 Stsc-Chr2290 6697 8369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2290g00002 4 240 Receptor kinase-like Gene Family AT4G02010 46.058 2.14e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Stsc2290g00002 PK_Tyr_Ser-Thr 1.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2290g00002 - - lang:109335602 471.47