Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2290g00001 ATGCACAAGAAATGTTTCTGTTGTTTTCTATCTGAAGAAGAGCAAAGCAAAGCACGGAATAAAGGAGAAAAGAATAAGAATAAGGATTATCCATGGGAAATCTACAAATCGAAGGAGTTGCTTCGTGCAACAAACAATTTTCATCAAGATCACAAGATTGGAGAGGGTGGATTTGGAAGTGTCTATTGGGGTCGAACAAGTAAAGGAGTCGAGATTGCAGTGAAGCGGTTGAAAACGATGACTGCAAAGGCAGAGATGGAGTTCGCAGTTGAAGTGGAAGTACTTGGAAGGGTTAGACATAAGAATTTGTTAGGTTTGAGGGGTTTCTATGCTGGTGGAGATGAAAGGTTAATTGTTTATGATTTCATGCCTAATCAAAGCTTGCTCACACATTTGCACGGTCACCTTTCTTCTAATTGTCTCTTAGATTGGCCTAAACGAATGAACATCGCAATTGGTGCAGCTGAAGGCTTAGCGTATTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAAGCAAGCAATGTTTTGTTAGACCTTGAATTCCAAGCTAAGGTAGCTGATTTTGGTTTCGCAAAGCTGATACCAGAGGGTGTAAGCCATCTAACAACCAGGGTTAAAGGAACACTAGGATATCTGGCGCCAGAATATGCCATGTGGGGTAAAGTCTCAGAGAGTTGTGATGTTTACAGCTTTGGGATTCTTCTTTTGGAGATTGTGAGTGCCAAGAAACCTATTGAGAAGCTACCCGGTGGAGTGAAAAGGGATATTGTTCAATGGGTGACACCTTACTTCCAGAAGGGTGCATTCAATCACATTGCGGATTCGAAGCTGAAGGGGAAGTTTGATTTGGATCAGTTGAAATCTGTGGTGATGATAGCTCTGAGATGCACGGATGGTAGCCCTGAGAAGAGGCCTAGCATGGAAGAGGTTGTGGATTGGCTTAAGGGTGCAGCTGGGAAGAGTAGAAGAAGAGAGGTTACTACTCCTCTAAGCTTGGGTTACAAGAACAATGGTGATGATGAACAGGATGACGATGATTACGGAGAGATTAGACCATACCCATCCAAATTGAAAATGACAACCGATAGTGATAGGCATAAGAGAAGATGA 1122 0.4242 MHKKCFCCFLSEEEQSKARNKGEKNKNKDYPWEIYKSKELLRATNNFHQDHKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDFMPNQSLLTHLHGHLSSNCLLDWPKRMNIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDLEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLPGGVKRDIVQWVTPYFQKGAFNHIADSKLKGKFDLDQLKSVVMIALRCTDGSPEKRPSMEEVVDWLKGAAGKSRRREVTTPLSLGYKNNGDDEQDDDDYGEIRPYPSKLKMTTDSDRHKRR 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2290g00001 373 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2290g00001 373 FunFam PTI1-like tyrosine-protein kinase At3g15890 19 122 - -
Stsc2290g00001 373 FunFam PTI1-like tyrosine-protein kinase At3g15890 123 333 - -
Stsc2290g00001 373 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 335 - -
Stsc2290g00001 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Stsc2290g00001 373 ProSiteProfiles Protein kinase domain profile. 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2290g00001 373 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Stsc2290g00001 373 Pfam Protein kinase domain 47 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2290g00001 373 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Stsc2290g00001 373 MobiDBLite consensus disorder prediction 352 366 - -
Stsc2290g00001 373 Gene3D Phosphorylase Kinase; domain 1 9 122 - -
Stsc2290g00001 373 MobiDBLite consensus disorder prediction 323 373 - -
Stsc2290g00001 373 CDD STKc_IRAK 53 320 - -
Stsc2290g00001 373 SUPERFAMILY Protein kinase-like (PK-like) 29 326 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2290g00001 Stsc-Chr2290 6697 8369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2290g00001 28 347 Receptor kinase-like Gene Family AT5G45780 42.202 1.06e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Stsc2290g00001 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2290g00001 - - gmx:100817283 590.497