Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc228g00007 ATGAAGCTTCATGAGCTTAATACACTCGAATGGGATGACCTTGTGGTTTCGAACAGCAACACCTCTACTATAACCACTAGTGGAAATGTTCAATCCTTGAATCAACAAAATCAAAGTTTTCTGAAAGGGAGCTCTGGCAATGTAGCAATTAATTTGGTTCAAGAAACTCCTTCTTTCAGTAAGTTAGCTCAGCCAATTGCTGGGAGCAATAGTGTTCCTTACAATATTCCAGATAGTGTTGATTTTCAGAGGACTTCTCCTATAGTTGGTGTTGATTCCTCCAACACTTTGGTAAATCCAAGCTTGCAAAGTCAGGACAGCTTTGGAACCTGGATAAACAATATGATATCTGATTCGCCACCTTGTTCTGTAGATGACTCAGCAGCTCTTGAATCTTCAATGTCTCCATTGGTTCAGGGACAATATTCATCAGTGGTGGCTAGTAATCAGCTTTCATCTCTGCCTGAACAAGTATTTACTATCACTGATGTGTCCCCGACGTGGGCTTCTTCCACCGAGAAAACAAAGATCCTAGTAACCGGTTTATTTCGTAATGACTATCAACACCTTGCAAAGTCCAATCTATATTGTGTCTGCAGTGATGCAAGTATTCCTGTAGAGACTGTGCAGCCCGGAGTCTACCGATGCTGGATATCGCCGCATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCTACAAACCAATTAGTCAAGTTGTTAATTTTGAGTATCGTACGCCACTGTTGCACAATCCTACTGCTTTTATGGAACAGAAATACGACTGGGAAGAATTTCGGCATCAGATTAGGCTTACTAATTTGCTCTTTGATACAAAAAAGAGCCTTGATATTTTCTCCAGTAAAGTGTCACCTAAGGCCCTGAAAGAGGCTAAGAAATTTGCCTTTAACACATCGTTTATTTCTAAAAGCTGGCAATACCTGATGAAGTCAACCGAGGAAAATATGATTCCATTTCCACAAGCAAAAGATGACTTGTTTCAAATTGCTTTGAAAAACAGATTAAAGGAATGGCTTTTGGAACGAATCAGCTTAGGCATTAAGACTACTGAACTTGATAAGCAAGGGCAAGGAGTAATCCATTTGTGTGCAATTCTGGGATATACTTGGGCTGTTTCTTTATTTTCATGGTCTGGCTTGTCTCTTGATTTCCGTGACAAATTCGGATGGACAGCTCTACATTGGGCAACATATTGTGGAAGGGAGAAAATGGTTGGAACTCTCTTGTCTTTTGGGGCGAAGCCAAATTTGGTCACGGATCCAACTCCCCAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTATATTAAGGGCTATGATGGGCTAGCGGCTTATCTTTCGGAAAAGTCTTTGGTTGAGCAACTCAATGATATGACCCTAGCCGGAAATATCAGTGGCCCGCTGGAAACCACTACAGTGGATATAGGAAACACTGAGAACCTGACTGAGGACCAACTGTACCTCAAGGAGACACTGGCATCTTACCGCACAGCAGCCGAGGCAGCAGTACGCATACAATCTGCATTTAGGGAGCGCTCTCTAAAATTGCGATCTATGACAATTGAATCTTTAAGTCCAGAGGCTCAAGCGCGCCAAATAGTGGCAGCAATGAAGATCCAGCATGCCTTCCGCAACTATGAGACAAGGAAAATGATGGCAGCTGCTGCTCGAATCCAACATAGATATCGTACATTTAAGTTGAGAAGAGAGTTTCTCCACATGAAACGTCAGGCTATTAAAATTCAGGCTGCTTTCAGGGGATTCCAAATGAGGAAGCAATATCGCAAAATTATTTGGTCAGTCGGGGTGCTTGAGAAAGTAATCCTGCGTTGGCGTTTGAAGAGAAAAGGTTTCCGTGGTCTCCAGGTCAATCCTGACGAAGAAATGAAGGATGAGAAGCAGGAAAGTGGCATAGAGGAGGACTTCTTTAGAACTAGTAGGAGACAAGCCGAAGAACGTGTTGAGAGGTCTGTCGTGCGCGTACAAGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATACAGAAGGATGAAGTTGGCACATAATCAAGCACAGATTTGTGTTGTGTAG 2097 0.4268 MKLHELNTLEWDDLVVSNSNTSTITTSGNVQSLNQQNQSFLKGSSGNVAINLVQETPSFSKLAQPIAGSNSVPYNIPDSVDFQRTSPIVGVDSSNTLVNPSLQSQDSFGTWINNMISDSPPCSVDDSAALESSMSPLVQGQYSSVVASNQLSSLPEQVFTITDVSPTWASSTEKTKILVTGLFRNDYQHLAKSNLYCVCSDASIPVETVQPGVYRCWISPHSPGFVNLYLSFDGYKPISQVVNFEYRTPLLHNPTAFMEQKYDWEEFRHQIRLTNLLFDTKKSLDIFSSKVSPKALKEAKKFAFNTSFISKSWQYLMKSTEENMIPFPQAKDDLFQIALKNRLKEWLLERISLGIKTTELDKQGQGVIHLCAILGYTWAVSLFSWSGLSLDFRDKFGWTALHWATYCGREKMVGTLLSFGAKPNLVTDPTPQNPGGCTAADLAYIKGYDGLAAYLSEKSLVEQLNDMTLAGNISGPLETTTVDIGNTENLTEDQLYLKETLASYRTAAEAAVRIQSAFRERSLKLRSMTIESLSPEAQARQIVAAMKIQHAFRNYETRKMMAAAARIQHRYRTFKLRREFLHMKRQAIKIQAAFRGFQMRKQYRKIIWSVGVLEKVILRWRLKRKGFRGLQVNPDEEMKDEKQESGIEEDFFRTSRRQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAQICVV 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc228g00007 698 Gene3D - 328 466 IPR036770 -
Stsc228g00007 698 SUPERFAMILY Ankyrin repeat 334 458 IPR036770 -
Stsc228g00007 698 ProSiteProfiles IQ motif profile. 560 589 IPR000048 GO:0005515
Stsc228g00007 698 ProSiteProfiles Ankyrin repeat profile. 396 428 IPR002110 GO:0005515
Stsc228g00007 698 ProSiteProfiles Ankyrin repeat region circular profile. 396 424 - -
Stsc228g00007 698 Gene3D - 559 607 - -
Stsc228g00007 698 ProSiteProfiles IQ motif profile. 541 570 IPR000048 GO:0005515
Stsc228g00007 698 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 30 690 - -
Stsc228g00007 698 Gene3D Immunoglobulins 155 249 IPR013783 -
Stsc228g00007 698 SMART ANK_2a 396 425 IPR002110 GO:0005515
Stsc228g00007 698 SMART ANK_2a 435 466 IPR002110 GO:0005515
Stsc228g00007 698 ProSiteProfiles IQ motif profile. 664 692 IPR000048 GO:0005515
Stsc228g00007 698 Pfam IPT/TIG domain 160 246 IPR002909 -
Stsc228g00007 698 ProSiteProfiles IQ motif profile. 583 607 IPR000048 GO:0005515
Stsc228g00007 698 SUPERFAMILY E set domains 160 247 IPR014756 -
Stsc228g00007 698 SMART iq_5 540 562 IPR000048 GO:0005515
Stsc228g00007 698 SMART iq_5 582 604 IPR000048 GO:0005515
Stsc228g00007 698 SMART iq_5 662 684 IPR000048 GO:0005515
Stsc228g00007 698 Pfam IQ calmodulin-binding motif 586 604 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc228g00007 Stsc-Chr228 36278 40612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc228g00007 1 695 CAMTA Transcription Factor Family AT3G16940 52.991 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc228g00007 K21596 - gmx:100819198 981.859