Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2288g00002 ATGATGTTCCGCTCCCTCACACAGGAACACGTGATAACTTTCCTTTTGAAAGACTATGAGGCATTGAACCCAACAAGATTCTCTTATGCTGATATCAAGAGAATCACACAGCAATTCAAGGACGAGTTAGGTGAAGGAGCCCATGGAGCTGTCTACAAAGGTAAATTGTCCAATCATATTCTTGTTGCTGTTAAGATTCTCAATACCACTGAAGGAGATGGCAAAGGGTTCATAAATGAAGTTGGAACTATGGCCAAAATCCACCATGTCAATGTGGTTCGCTTGCTTGGCTATTGTGCCGACGGATCTCGCCGTGCTTTAGTTTATCACTTCTTCCCAAAAGGTAATCTGCAAGGCTTCATGGCTTTACCAAGCAACAAGGAAGGCTTCCTCGGATGGAACAAGATGCATCAGATTGCTCTGGGCATAGCCAAAGGGATTGAATATCTTCACCAAGGTTGTGATCAAAGAATTCTGCATTTCGACATTAATCCTCGTAATGTCTTGTTAGATGAGAGTCCCACTCCAATAATTTCAGATTTCGGTTTGGCTAAGTTATGCTCCAAGAATTCTGGGGCCAT 581 0.4286 MMFRSLTQEHVITFLLKDYEALNPTRFSYADIKRITQQFKDELGEGAHGAVYKGKLSNHILVAVKILNTTEGDGKGFINEVGTMAKIHHVNVVRLLGYCADGSRRALVYHFFPKGNLQGFMALPSNKEGFLGWNKMHQIALGIAKGIEYLHQGCDQRILHFDINPRNVLLDESPTPIISDFGLAKLCSKNSGA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2288g00002 193 Gene3D Phosphorylase Kinase; domain 1 15 111 - -
Stsc2288g00002 193 ProSitePatterns Protein kinases ATP-binding region signature. 43 65 IPR017441 GO:0005524
Stsc2288g00002 193 FunFam serine/threonine-protein kinase PBS1-like 8 111 - -
Stsc2288g00002 193 SUPERFAMILY Protein kinase-like (PK-like) 20 190 IPR011009 -
Stsc2288g00002 193 Gene3D Transferase(Phosphotransferase) domain 1 112 193 - -
Stsc2288g00002 193 Pfam Protein tyrosine and serine/threonine kinase 38 190 IPR001245 GO:0004672|GO:0006468
Stsc2288g00002 193 ProSiteProfiles Protein kinase domain profile. 37 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2288g00002 193 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 190 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2288g00002 Stsc-Chr2288 6365 6945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2288g00002 27 189 Receptor kinase-like Gene Family AT1G66980 50.920 1.26e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc2288g00002 PK_Tyr_Ser-Thr 8.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2288g00002 - - ahf:112805998 320.857