Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2288g00001 ATGAGGAGTAGGAAAGGTTTGTCCTTCTCCCGGTTAAAGTTTCTGCTCCTAATTATCACGGTTGCGCTACCACTACAAACTTGTGTAGCAGAGCATCATAACAGAACATGTAGTCCCTCCTCCTGCGGCAAGCTCACCAACATAACGCATCCTTTCCGGCTGAAGGGTGACCCCACAAACTGCGGTCATCCGGGCTACGAGTTGTCATGTGAGAATAACATCACCCTCTTATATCTTTTCCACGGTAAAAGCTACCGTGTTGAAGCAATAAACTACAACAACTTCGCCATCCGCCTTGTAGATCCAGCCATCTCACAGAATGACTGTTCTACCCTTCCTCGCTATTCTTTATCCCGTTCCAATTTCAGTGCGTTTATGGATACGGGAACATATGAATCTTTTCAGGAACGAGTTTTCTTAAATGGCTCCACGCAGGAGTTCAGCGAAGTAAGAATGTTCGAGCACGTGGTGTTCTTGAAGTGCAGCAATCCGGTGAGGGATGATCCACGATACGTGGACACTGCACCTTACATAAAACAAGAAGGCAGCAATGATAATAATAATGTTTATGCTGTTCTTGGAGACTTGGCGGTGGGTGAATTAAGAGATGATTGCCGTGTGAAGCTGGTTGTGCCCTCATCATTTCTTGTTCCACGTAGATCGTGGGATGATTCAGTATTTATCCAACAGAACTTGTCCTACTCTGAAATCCATAGGAAAATCAGTTACGGATTTGATGTTTCGTGGATGGTGAGCTTTACTTGTGAAGATAAATGCAGGATGCTTGATTGCGCATTCAATGAAATCACTCAAAATATCTCCTGTTGGGATTATCCCGCTTGTGACTACACTTCACTGCTGAACTACAAATGTGGACTTCGCAAATTGGTAAACATGGATAGTGGTGACGACTTCTCTAAAAGAGATGTAATACCTCTTGTTAAGGTTGGATTTCTCATGGGATTTTTTATGCCATACATAATCCTCAAACAAGCATTAGGTGTGATGTTTTTCTTTGGATTGTTGATCTACACATTTAGACGAAGACATTTATCAATCTATGAAAATATTGAGGATTTTCTACAAGGAAACAGTCTCATGCCAATAAGATATTCATATAAAGAGATAAAGAAGATGACCAGACGTTTTAAGGAAAAGCTTGGAGAAGGAGGATTTGGTGCAGTGTACAAAGGAAAACTTCAAAGTGGACCTTCTGTAGCCATAAAAATGTTGGGTAAAGCTAAAGCTAATGGCCAAGAATTTATTAGTGAAGTTGCTACCATTGGTAGAATACACCATGCCAATGTGGTAAGGTTGACTGGATTTTGTGTGGAAGGTTCAAAACGTGCTCTGATATATGAATTCATGCCAAATGGTTCTCTAGATAAATATATATTTTCCAAAGAAAAAAATGTTTCTCTAACTTCCGAAATGATGTTTGAGATATCTGTGGGAGTAGCACGAGGTATGTCTTATTTGCATGAAGGCTGTGACATGCAGATTTTGCATTTTGATATCAAGCCTCACAACATCCTTCTTGATAAAAACTTCATTCCAAAGGTCTCAGACTTTGGTCTTGCAAAGCTATATCCCCTTGATAATAGTATTGTAACATTGACTGCGGCAAGAGGAACAATTGGTTACATGGCTCCGGAATTGTTCTATCAAAATATTGGAGCAGTGTCTTACAAGGCTGATGTCTATAGCTTTGGAATGCTTCTGATGGAAATGGCGAGTCAGAGAAGAAATTTGAATCCACATGCAGAGCATTCAAGCCAACTTTACTTTCCATTTTGGATTTATGATCAGTTGGCTGCGGAAGAAAATGGTGAGATAGAGATGGAAACTTTTGATCTTGAAGAAAGAAGTGAGCTAGCAAAAAAGATGTTTATAACTGCATTATGGTGTATACAATTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTAGTGGAAATGTTAGAAGGAGTTATTGCAAGCATTGAAATGCCTCCAAAGCCTTCGTTTTATCCAAATGATGTGATTCAAAGGGATTCCAATGTTGACTCATCTGGAGTAAATGATTCAAATGATTCTGATGTCTCTTCAAGTTTTGAGGAGGAAAGTACAACCAACCCCTTGTTAAAGTTTTCTAGTTGA 2139 0.3978 MRSRKGLSFSRLKFLLLIITVALPLQTCVAEHHNRTCSPSSCGKLTNITHPFRLKGDPTNCGHPGYELSCENNITLLYLFHGKSYRVEAINYNNFAIRLVDPAISQNDCSTLPRYSLSRSNFSAFMDTGTYESFQERVFLNGSTQEFSEVRMFEHVVFLKCSNPVRDDPRYVDTAPYIKQEGSNDNNNVYAVLGDLAVGELRDDCRVKLVVPSSFLVPRRSWDDSVFIQQNLSYSEIHRKISYGFDVSWMVSFTCEDKCRMLDCAFNEITQNISCWDYPACDYTSLLNYKCGLRKLVNMDSGDDFSKRDVIPLVKVGFLMGFFMPYIILKQALGVMFFFGLLIYTFRRRHLSIYENIEDFLQGNSLMPIRYSYKEIKKMTRRFKEKLGEGGFGAVYKGKLQSGPSVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLTGFCVEGSKRALIYEFMPNGSLDKYIFSKEKNVSLTSEMMFEISVGVARGMSYLHEGCDMQILHFDIKPHNILLDKNFIPKVSDFGLAKLYPLDNSIVTLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEMASQRRNLNPHAEHSSQLYFPFWIYDQLAAEENGEIEMETFDLEERSELAKKMFITALWCIQLKPSDRPSMNKVVEMLEGVIASIEMPPKPSFYPNDVIQRDSNVDSSGVNDSNDSDVSSSFEEESTTNPLLKFSS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2288g00001 712 FunFam serine/threonine-protein kinase PBS1-like 353 455 - -
Stsc2288g00001 712 MobiDBLite consensus disorder prediction 669 712 - -
Stsc2288g00001 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Stsc2288g00001 712 SUPERFAMILY Protein kinase-like (PK-like) 366 655 IPR011009 -
Stsc2288g00001 712 Gene3D Phosphorylase Kinase; domain 1 358 455 - -
Stsc2288g00001 712 FunFam PR5-like receptor kinase 456 666 - -
Stsc2288g00001 712 CDD STKc_IRAK 387 656 - -
Stsc2288g00001 712 Pfam Protein tyrosine and serine/threonine kinase 383 654 IPR001245 GO:0004672|GO:0006468
Stsc2288g00001 712 SMART serkin_6 381 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2288g00001 712 ProSiteProfiles Protein kinase domain profile. 381 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2288g00001 712 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524
Stsc2288g00001 712 MobiDBLite consensus disorder prediction 673 712 - -
Stsc2288g00001 712 Pfam Wall-associated receptor kinase galacturonan-binding 37 101 IPR025287 GO:0030247
Stsc2288g00001 712 Gene3D Transferase(Phosphotransferase) domain 1 456 664 - -
Stsc2288g00001 712 PANTHER RUST RESISTANCE KINASE LR10-RELATED 354 675 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2288g00001 Stsc-Chr2288 533 4322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2288g00001 12 670 Receptor kinase-like Gene Family AT5G38260 34.706 4.44e-109 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc2288g00001 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2288g00001 - - adu:110273082 870.537