Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2283g00001 ATGATGGCCACAAAGATCAACCAACAACTCTTCTCTCTGTTACTCTTACTGTTCCTGTTCCTTCTCATCCCACTTTCATCATCTCAGCCAGATCACTTCCTATATTCCGGATTCAAGAACGCTGATGCAAAAAACATAACCTTAAACGGCATAGCAGAAATCGAGAAAAATGGTGTACTAAGATTAACGAACGAGACAAGCAGATTAATGGGTCACGCTTTTTACCCTTCACCATTTCACCTCAAAGACAAAGCCTCTGGTGGTAAAGTTCTCTCCTTTTCAACTTGCTTCGCTCTTGCAATTGTCCCTGAGTACCCCAAGCTCGGTGGCCATGGCTTAGCCTTCACCATAGCCACCTCAAAAGATCTCAAAGCTCACCCGAGCCAGTACCTGGGTCTCCTCAACCCAGATGATGTTGGGTTGCTTGCTAGTTCTCATTATATATTGGGTTGGAGCTTTAGAATCAATGGTCCAGCACCAGTTCTTGATCTCGCTGATCTGCCGCAACTTCCGGGTCCGAAGAAGAAGCACAAGTCTCTGATAATTGGGGTTTCTACTTTGATTTCAGTTTTGGTTTTGTGTGGAGTTGCAATTGGGGTTTACCTCTTCAGGAAGATGAAGAATGCAGATGTAATTGAAGCTTGGGAGCTGGAGATTGGGCCGCATAGGTACTCATACCAAGAGCTGAAGAAAGCTACAAGAGGATTCAGGGACAAGGAGCTCCTTGGGCAGGGTGGATTTGGAAGGGTTTACAAAGGGACATTGCCGAATTCGAGGACACAGGTGGCTGTAAAGAGAATCTCACATGAATCAAAGCAGGGTCTGAGGGAATTTGTATCAGAGATTGCAAGCATAGGCCGGCTCAGGCACCGGAACTTGGTTCAGTTGTTGGGATGGTGCCGGCGCCGGGGAGATCTCTTGCTTGTGTATGATTTTATGGCTAATGGGAGTTTGGATAAGTACTTGTTTGATGAGCCAAAGATTGTCCTGAATTGGGAACAGAGGTTCAAGATCATAAAGGGTGTTGCTTCAGCTCTTTTGTATCTTCATGAGGGCTATGAGCAAGTAGTTATACATAGAGATGTGAAGGCTAGTAATGTGATGCTTGATTCCGAAATGAATGGGAGGCTAGGCGATTTCGGGCTAGCGAGATTGTATGAACATGGTGCTAATCCAAGCACAACAAGAGTTGTTGGTACATTGGGGTATCTGGCACCAGAGTTGCCTAGAACAGGAAGGGCAACCACAAGCTCCGACGTGTTCGCGTTCGGCGCGCTTCTCCTAGAGGTAGCTTGCGGTCGCAGGCCTATCGAGCCAAAGGCATTGCCGGAGGAGTTGGTTCTTGTGGATTGCTTGTGGGAGAAGTTCAAAGAAGGGAGAATACTTGACATGGTGGATCCAAGGTTGAATGGGGATTTTGATGAGAATGAGATTCTTATGGTGCTGAAATTAGGGTTGATATGTTCAAATGATAATCCAAATGGTAGGCCAAACATAAGGCAAGTGATGAGGTATTTGGATGGAGAGGTTGAGTTGCCAGATGAGATGAGAATGCATGTAGGTTCAAATCATGAAGGGTTTGATGAGTTCTTGCACTCACTTGCTTCTTCTTCATTTGACACTGGCTCATATATTGGAACTAGAGACATGGATAATAGTTTTACTTCTTTTGGTTATTCTCCTCAGTCAGTCACTCAAACTAGAGGAGAAACAAGGTGA 1719 0.4532 MMATKINQQLFSLLLLLFLFLLIPLSSSQPDHFLYSGFKNADAKNITLNGIAEIEKNGVLRLTNETSRLMGHAFYPSPFHLKDKASGGKVLSFSTCFALAIVPEYPKLGGHGLAFTIATSKDLKAHPSQYLGLLNPDDVGLLASSHYILGWSFRINGPAPVLDLADLPQLPGPKKKHKSLIIGVSTLISVLVLCGVAIGVYLFRKMKNADVIEAWELEIGPHRYSYQELKKATRGFRDKELLGQGGFGRVYKGTLPNSRTQVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKIVLNWEQRFKIIKGVASALLYLHEGYEQVVIHRDVKASNVMLDSEMNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGRATTSSDVFAFGALLLEVACGRRPIEPKALPEELVLVDCLWEKFKEGRILDMVDPRLNGDFDENEILMVLKLGLICSNDNPNGRPNIRQVMRYLDGEVELPDEMRMHVGSNHEGFDEFLHSLASSSFDTGSYIGTRDMDNSFTSFGYSPQSVTQTRGETR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2283g00001 572 ProSiteProfiles Protein kinase domain profile. 236 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2283g00001 572 CDD STKc_IRAK 242 508 - -
Stsc2283g00001 572 Gene3D Transferase(Phosphotransferase) domain 1 313 524 - -
Stsc2283g00001 572 SUPERFAMILY Protein kinase-like (PK-like) 217 515 IPR011009 -
Stsc2283g00001 572 ProSitePatterns Protein kinases ATP-binding region signature. 242 265 IPR017441 GO:0005524
Stsc2283g00001 572 SMART serkin_6 236 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2283g00001 572 PANTHER - 140 513 - -
Stsc2283g00001 572 Gene3D - 31 141 - -
Stsc2283g00001 572 Pfam Legume lectin domain 32 136 IPR001220 GO:0030246
Stsc2283g00001 572 Gene3D Phosphorylase Kinase; domain 1 221 312 - -
Stsc2283g00001 572 Pfam Protein kinase domain 237 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2283g00001 572 FunFam L-type lectin-domain containing receptor kinase S.4 313 519 - -
Stsc2283g00001 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Stsc2283g00001 572 FunFam L-type lectin-domain containing receptor kinase S.1 221 312 - -
Stsc2283g00001 572 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 136 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2283g00001 Stsc-Chr2283 3978 6378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2283g00001 139 514 Receptor kinase-like Gene Family AT3G55550 67.016 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc2283g00001 Pkinase 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2283g00001 - - gmx:100784346 728.398