Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc227g00006 ATGGCGCCTTCTTCATCTTCAATTTCCACTGATCAAGCCTCTACCAAGAAGATCAGAAAGCCTTACACCATTACCAAGTCCAGAGAGAGCTGGTCCGATGAAGAACACGACAAGTTCCTCGAAGCCCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGCTCAAAAACTGTTATTCAGATTCGTAGCCATGCCCAAAAGTACTTTTTGAAAGTTCAAAAGAATGGGACAACTGCTCATGTGCCTCCTCCTCGTCCTAAGCGAAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGTTTTGTTACCATTTCCAGCATCTATTGCTTATGCTTCTTCAAGAAACACCCTTGTACCTGGCTATGCAGCAACATGGGATGAAAATTCAATGCTCATGAATGCTGAATCCAACAAATTCATGCCCTGCCATGATGAACTCATCACCAATCTTAATGGAAACGAAGCTAATTTTGGATCAAAGGGTACTAGAATGCTGGCAGCTACTGAGATGCCAAATCATGAAAAACAAACTTGTGTAATTCATGGATTGCCAGATTTTGCTGTAGTTTACCGCTTTATTGGAAGTGTTTTTGATCCTCATACTAGAGGCCATGTTCATAAGCTGAAGGAAATGGATCCTATAAATTTTCAAACCGTTTTGTTGTTAATGAAAAATCTCACACTCAACTTGTCTAAGCCTGGCATTGAACCCATTATACAGAAGGCATTGCCATTATATGATGTCAATACAAAGACAGTTGGAGTTACTCCTAGAATTCAATGTCAAGAAGCAAACAGATGA 819 0.3968 MAPSSSSISTDQASTKKIRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTTAHVPPPRPKRKAAHPYPQKASKNVLLPFPASIAYASSRNTLVPGYAATWDENSMLMNAESNKFMPCHDELITNLNGNEANFGSKGTRMLAATEMPNHEKQTCVIHGLPDFAVVYRFIGSVFDPHTRGHVHKLKEMDPINFQTVLLLMKNLTLNLSKPGIEPIIQKALPLYDVNTKTVGVTPRIQCQEANR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc227g00006 272 PANTHER SWI/SNF COMPLEX-RELATED 7 237 - -
Stsc227g00006 272 MobiDBLite consensus disorder prediction 1 20 - -
Stsc227g00006 272 Pfam Myb-like DNA-binding domain 28 73 IPR001005 -
Stsc227g00006 272 Gene3D - 31 78 - -
Stsc227g00006 272 FunFam protein REVEILLE 6 isoform X1 30 78 - -
Stsc227g00006 272 ProSiteProfiles Myb-like domain profile. 23 73 IPR001005 -
Stsc227g00006 272 ProSiteProfiles SANT domain profile. 26 79 IPR017884 -
Stsc227g00006 272 MobiDBLite consensus disorder prediction 1 33 - -
Stsc227g00006 272 MobiDBLite consensus disorder prediction 79 98 - -
Stsc227g00006 272 CDD SANT 30 73 IPR001005 -
Stsc227g00006 272 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Stsc227g00006 272 SMART sant 27 75 IPR001005 -
Stsc227g00006 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 77 IPR017930 -
Stsc227g00006 272 NCBIfam myb-like DNA-binding domain, SHAQKYF class 26 75 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc227g00006 Stsc-Chr227 36996 39798 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc227g00006 Myb_DNA-binding 4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc227g00006 - - gmx:100807156 368.237