Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc227g00004 ATGCTGGATCTTAATCTCAACTTCGATTCCGCCTCCGCCACCCAAATGGAAAGTTCTGGAAGCTTCAATTCCTCCCTCGCCAATGCCGACACCGAGGATTCATGCTCCTACGGAGGAGGCGCTGACGCCGTACCCTACAACTTCTCCATACTCAAGAACGCCGTCGCCGGGGATGGACAGACTGGAGCTACCGGCGCTGGAGACGACGGTTGTGTACGGACAATCCAGCTTTTTCCGGTAGTCGGAGCCGGTGACGGTGTTTCAGCTGAGCAGTTACGTGGCTCGTCGTCAGGTAGTAATAAGGCGTGGTTGGAATTTGTGACGAAGGAGGATAATAATCGAGGCGGTGGTAGTGCGACGGCGGCGGCGGCGGTGGAGCAGAGAATGGTTCCTCAGAGGGCGCAGCAGGTGAAGAAGAGTCGGCGTGGACCGAGATCGCGAAGCTCGCAGTATCGCGGCGTGACGTTCTATCGAAGGACCGGACGATGGGAATCGCATATTTGGGACTGTGGGAAACAAGTGTACTTGGGTGGATTTGATACAGCACATGCAGCAGCTAGGGCGTATGATCGAGCTGCAATCAAGTTCCGTGGCATTGATGCAGATATCAATTTCAACGTCAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTCACAAAGGAAGAGTTTGTGCATATTCTGCGTCGCCAGAGCACTGGTTTTTCGAGGGGGAGCTCCAAATACAGGGGAGTTACCCTGCACAAATGTGGTAGATGGGAAGCGCGCATGGGGCAGTTTCTTGGGAAAAAGTATATCTATCTTGGACTATTCGATAGTGAGCTAGAGGCTGCAAGGGCATATGATAGGGCTGCTATAAAGTGCAATGGAAGGGAAGCAGTTACTAACTTTGAGCCCAGCTCATATGAAGGAAAGGTAAATTCTCATGATGAGAATGAAGATAACAAGCAAAGTCTTGATCTTAATTTGGGCATAGCTCCCCCTTCTTTCTCTGAAGATCAAGTCAATCACATTCACAACAATGGGATCGGTTTCCAAGTTCAGCCTAGCTGGGATGACATCCCTATTGATAGGAGATTCATGTTTGAGCACTCTGCATCAAGATCACTGAATACTCAGCCACCTCATGGATTCTCCATAGCATCTCAGCATCCTTCTGCTTGGGGCGGTACTGATTTCTTTCCCATATACAAGGAAAGAGCAATAACGAATATGATGGAAGCCAATCCCTTGCAAAATTGGGCATGGCAAGTCCAAGGTCATTGTGGCGGGGCAACTCCAATTCCACCTGTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACATTAATCCCATCAGCTGCGGATAATCAAATTCATTTTCCAAACATGACATTCCTCTACCCTAACTTCCCTCCGTCGATCGCCAATTCTGGCACCATGTCACCCTTCTACTGA 1440 0.4938 MLDLNLNFDSASATQMESSGSFNSSLANADTEDSCSYGGGADAVPYNFSILKNAVAGDGQTGATGAGDDGCVRTIQLFPVVGAGDGVSAEQLRGSSSGSNKAWLEFVTKEDNNRGGGSATAAAAVEQRMVPQRAQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGKVNSHDENEDNKQSLDLNLGIAPPSFSEDQVNHIHNNGIGFQVQPSWDDIPIDRRFMFEHSASRSLNTQPPHGFSIASQHPSAWGGTDFFPIYKERAITNMMEANPLQNWAWQVQGHCGGATPIPPVSAAASSGFPSTLIPSAADNQIHFPNMTFLYPNFPPSIANSGTMSPFY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc227g00004 479 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 FunFam AP2-like ethylene-responsive transcription factor 241 301 - -
Stsc227g00004 479 FunFam AP2-like ethylene-responsive transcription factor 149 208 - -
Stsc227g00004 479 CDD AP2 150 208 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 SUPERFAMILY DNA-binding domain 149 208 IPR016177 GO:0003677
Stsc227g00004 479 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 MobiDBLite consensus disorder prediction 131 151 - -
Stsc227g00004 479 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 115 325 - -
Stsc227g00004 479 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 SUPERFAMILY DNA-binding domain 241 300 IPR016177 GO:0003677
Stsc227g00004 479 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 Gene3D AP2/ERF domain 241 300 IPR036955 GO:0003700|GO:0006355
Stsc227g00004 479 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Stsc227g00004 479 Pfam AP2 domain 241 291 IPR001471 GO:0003700|GO:0006355
Stsc227g00004 479 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc227g00004 Stsc-Chr227 24436 27135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc227g00004 74 325 AP2-EREBP Transcription Factor Family AT4G36920 67.578 2.06e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc227g00004 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc227g00004 K09284 - gmx:100808212 660.603