Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc227g00003 ATGGGAATCGCATATTTGGGACTGTGGGAAACAAGTGTACTTGGGGCGTATGATCGAGCTGCAATCAAGTTCCGTGGCATTGATGCAGATATCAATTTCAACGTCAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTCACAAAGGAAGAGTTTGTGCATATTCTGCGTCGCCAGAGCACTGGTTTTTCGAGGGGGAGCTCCAAATACAGGGGAGTTACCCTGCACAAATGTGGTAGATGGGAAGCGCGCATGGGGCAGTTTCTTGGGAAAAAGTATATCTATCTTGGACTATTCGATAGTGAGCTAGAGGCTGCAAGGGCATATGATAGGGCTGCTATAAAGTGCAATGGAAGGGAAGCAGTTACTAACTTTGAGCCCAGCTCATATGAAGGAAAGGTAAATTCTCATGATGAGAATGAAGATAACAAGCAAAGTCTTGATCTTAATTTGGGCATAGCTCCCCCTTCTTTCTCTGAAGATCAAGTCAATCACATTCACAACAATGGGATCGGTTTCCAAGTTCAGCCTAGCTGGGATGACATCCCTATTGATAGGAGATTCATGTTTGAGCACTCTGCATCAAGATCACTGAATACTCAGCCACCTCATGGATTCTCCATAGCATCTCAGCATCCTTCTGCTTGGGGCGGTACTGATTTCTTTCCCATATACAAGGAAAGAGCAATAACGAATATGATGGAAGCCAATCCCTTGCAAAATTGGGCATGGCAAGTCCAAGGTCATTGTGGCGGGGCAACTCCAATTCCACCTGTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACATTAATCCCATCAGCTGCGGATAATCAAATTCATTTTCCAAACATGACATTCCTCTACCCTAACTTCCCTCCGTCGATCGCCAATTCTGGCACCATGTCACCCTTCTACTGA 924 0.4502 MGIAYLGLWETSVLGAYDRAAIKFRGIDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGKVNSHDENEDNKQSLDLNLGIAPPSFSEDQVNHIHNNGIGFQVQPSWDDIPIDRRFMFEHSASRSLNTQPPHGFSIASQHPSAWGGTDFFPIYKERAITNMMEANPLQNWAWQVQGHCGGATPIPPVSAAASSGFPSTLIPSAADNQIHFPNMTFLYPNFPPSIANSGTMSPFY 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc227g00003 307 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Stsc227g00003 307 Gene3D AP2/ERF domain 69 128 IPR036955 GO:0003700|GO:0006355
Stsc227g00003 307 CDD AP2 69 129 IPR001471 GO:0003700|GO:0006355
Stsc227g00003 307 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700|GO:0006355
Stsc227g00003 307 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Stsc227g00003 307 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Stsc227g00003 307 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Stsc227g00003 307 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 153 - -
Stsc227g00003 307 FunFam AP2-like ethylene-responsive transcription factor 69 129 - -
Stsc227g00003 307 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc227g00003 Stsc-Chr227 24436 27135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc227g00003 7 153 AP2-EREBP Transcription Factor Family AT4G36920 64.286 8.43e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc227g00003 AP2 5.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc227g00003 K09284 - gmx:100808212 479.944