Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc226g00017 ATGGATCCGGGTGCGATGATGAACGAGGGTTCGTTTGGGAATGGGGGAGGCAATACGGTGCCGTTTAGCTTGGCGGAGATCTGGCAGTTCCCGCAGGCTGTCAGTGGCGCTGGAGGCGGCGGTTTGGGGCTCAGGAGGCCGCAGTTTGGGTTAGGACAGTTTGGGGATTTCATTGCCGGTCCGAACCGGGAAACTGGACCGGTTGGTTCAGAACAAAGGGCGGCTAGTGGTGGCGGTGGTAGTAGGAAGAGGCGTGAATCAGAGGAGGAATCCCCTAAGGCCGTTTCCACCAGCAATGTTGCACCTAATGCCGCGAATGATGGGGATGGAAAACGGCTTAAAGGAGGAGGAGGAGCGTCCGGGAGCCGAAATGAAAGCCGTGACGCGAAGGTTGAAGGAGCAGAAGCCAGTTCAGGAAAGCCTGCGGACCAAAATAATCAGGCACCACCTGACCCTCCTAAGCAAGATTACATCCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTTCCTGGTTGTAATAAGGTTATTGGAAAGGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGTCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTCAATTCAAGACTGAACACTGGCATTGAAGCCTTTCCTCCTAAAGATTTTGGTCAGCAAACATTTGATCCGGCTACCTTGCCATTTGGTTCTCAAGCTACTAGAGACTATAGCAGAGGTTCTTCCCCAGAGTGGTTACATATGCAGGTAGGAGGTGCGTTCGAAAGAACAACGTAG 864 0.5035 MDPGAMMNEGSFGNGGGNTVPFSLAEIWQFPQAVSGAGGGGLGLRRPQFGLGQFGDFIAGPNRETGPVGSEQRAASGGGGSRKRRESEEESPKAVSTSNVAPNAANDGDGKRLKGGGGASGSRNESRDAKVEGAEASSGKPADQNNQAPPDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDFGQQTFDPATLPFGSQATRDYSRGSSPEWLHMQVGGAFERTT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc226g00017 287 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 82 257 IPR024097 GO:0006355
Stsc226g00017 287 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Stsc226g00017 287 Gene3D - 163 239 IPR036638 GO:0046983
Stsc226g00017 287 MobiDBLite consensus disorder prediction 36 156 - -
Stsc226g00017 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 233 IPR036638 GO:0046983
Stsc226g00017 287 CDD bHLH_AtBPE_like 156 241 - -
Stsc226g00017 287 SMART finulus 172 222 IPR011598 GO:0046983
Stsc226g00017 287 Coils Coil 213 233 - -
Stsc226g00017 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Stsc226g00017 287 MobiDBLite consensus disorder prediction 78 92 - -
Stsc226g00017 287 FunFam Basic helix-loop-helix transcription factor 163 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc226g00017 Stsc-Chr226 57024 59812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc226g00017 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.627 1.96e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc226g00017 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc226g00017 - - gmx:100784478 365.54