Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc226g00001 ATGGGTGCAGGGGACTACTACAAGGTTCTGAAGGTGAATCGTCACGCCACAGAAGAGGAGCTCAAGAAAGCATATAAGAGGCTTGCAATGAAGTGGCACCCAGATAGGAACCACCACCAAGAAGTGAAGAACAAGGAGGAAGCTGAAGCCAAGTTCAAGCAGATATCTGAGGCATATGATGTCTTGAGTGACCCCAAAAAGCGCCAGATCTATGATTTCTATGGCCATTACCCTCTCAATTCCATGAAGGTTAACAAAAAGGAACAAGACTATGATGGTAGGAATAATAATGTGAAGGAGGAGAAAGCAGGGGTGGTGGTTGAGACCAAACTTGTCTGCACTCTTGAGGAGCTTTACAAAGGTTGCAGAAAGAAGTTGAAGATCTCAAGAAATGTTGTTGATGAACTTGGCAAGTTGAAGTGTGTGGAAGAAACCTTGAAGATAGACATTAAACCAGGTTGGAAAAAAGGAACAAAGATAACATTCCCCGGGAAAGGGAACCAAGAACAAGGAGGTTCTCCTCCTTCTGATCTAGTCTTTGTGGTGGATGAGAAACCGCATGCCGTGTTCAAGAGAGATGGAAATGACTTAGTCGTCACGCAGAAGATCTTGCTCGTGGAGGCGCTCTCGGGGAAGACACTGAACTTGACAACCTTGGACGGAAGAGAAATCGCGGTGGAAGTGACAGACATTGTGAAACCGAAGCATGTTATGGTGGTCCCAGATGAAGGTTATTGTGATGGCATGTTTTGCAGCTGTTGTTATAAACATTGCAGTGTGAAAACTTCTTTTTGTGTTTGTAACTTGAGAACTGGTTTATTGCAGTTGTAA 831 0.4416 MGAGDYYKVLKVNRHATEEELKKAYKRLAMKWHPDRNHHQEVKNKEEAEAKFKQISEAYDVLSDPKKRQIYDFYGHYPLNSMKVNKKEQDYDGRNNNVKEEKAGVVVETKLVCTLEELYKGCRKKLKISRNVVDELGKLKCVEETLKIDIKPGWKKGTKITFPGKGNQEQGGSPPSDLVFVVDEKPHAVFKRDGNDLVVTQKILLVEALSGKTLNLTTLDGREIAVEVTDIVKPKHVMVVPDEGYCDGMFCSCCYKHCSVKTSFCVCNLRTGLLQL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc226g00001 276 SUPERFAMILY Chaperone J-domain 4 80 IPR036869 -
Stsc226g00001 276 Pfam DnaJ domain 5 72 IPR001623 -
Stsc226g00001 276 CDD DnaJ_C 107 244 - -
Stsc226g00001 276 SUPERFAMILY HSP40/DnaJ peptide-binding domain 108 187 IPR008971 GO:0006457|GO:0051082
Stsc226g00001 276 CDD DnaJ 5 64 IPR001623 -
Stsc226g00001 276 Gene3D - 109 185 - -
Stsc226g00001 276 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Stsc226g00001 276 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 244 - -
Stsc226g00001 276 PRINTS DnaJ domain signature 7 25 IPR001623 -
Stsc226g00001 276 PRINTS DnaJ domain signature 47 67 IPR001623 -
Stsc226g00001 276 PRINTS DnaJ domain signature 67 86 IPR001623 -
Stsc226g00001 276 PRINTS DnaJ domain signature 25 40 IPR001623 -
Stsc226g00001 276 SMART dnaj_3 4 67 IPR001623 -
Stsc226g00001 276 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Stsc226g00001 276 FunFam Dnaj homolog subfamily b member 103 185 - -
Stsc226g00001 276 Pfam DnaJ C terminal domain 107 245 IPR002939 -
Stsc226g00001 276 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 246 IPR008971 GO:0006457|GO:0051082
Stsc226g00001 276 Gene3D DnaJ domain 3 108 IPR036869 -
Stsc226g00001 276 Gene3D - 187 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc226g00001 Stsc-Chr226 3072 5395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc226g00001 6 74 C2H2 Transcription Factor Family AT1G74250 37.681 1.85e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc226g00001 K09510 - gmx:100786068 385.185