Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc225g00005 ATGGAGTCGTCGTCATCATCAACAACTGCAATAGCATCAACATCATTAACGGCGATACAGAACTCCTTCGACGCCGTTTATTCCCGCTACGCACGCGAGGCGCTCGACGAATTGCCTGATAACTTCACCATCACCGACCCGTCAATCCCAGGCCATCCAATCGTCTTTGCCAGCCAAGGCTTCCTCAAGATGACCGGTTACGACCGGGACGAGGTTGTCGGAAGAGGTGGGGCCATGTTCCAAGGTGAGAGGACTTCTAGAAGGTCGGTGATGGATGTCAGGGAGGCCGTTAGGAATGAGCGGAGCTGCCAGGTCAGCCTGCTTAACTACCGCAAGGATGGGACACCCTTTTGGATGCTCTTTCATGTCAGTCCTGTTTTTGGAAGGGATAGTGGTGGGGTTGTTCACTTTGTGGCGGTTCAGGTTCCTTTGCAAGGGAGGAGGAGGAGGAGGCGCCGGTCTATTGGGTGCCGGAGAGGTAGCGATGGCGGTGGCGGTGGCGGCGATTATGTTTTTGGGTGTTGTAGGAAGGAAGTGTGCAATGATAACGGCTTGGAGGTTGAGTTAGTTTCTTCCATGGATCACGGGTTAGACCATGATACTAGAGAATTGGAGAGTGATGAGCCGTGTGAGGCAACTGACGATGAGAAGCGAAGCGCAATGGTTGCAATGGACAACATCTTTTCGGTGCTAACTCACTACAGCGAAATCAAACAAAGCTTTGTATTAGCTAATCCGCATTTACCTGACATGCCCATTGTATATGCCAGTGACGCCTTCTTGAAATTGACAGGTTATGCAAAGGATGAAGTTTTGGGCCGCAATTGCAGATTTTTAAGTGGACCGGATACTGATGATTCAACTTTATATCTGATAAGGGAAAGCATTAGAAATCAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAGAAGCTCATTTTGGAACCTTCTCCACATCTCACCTGTACGTGATGCTTCTGGCAAGGTAGCATACTATGTTGGTGTTCAAATAGAAGAGGAGCATAAAAACGAGGATAGACAAGGGTTGAGCCCTGAGAAGAGGCAGCTTAGTGTTGTTGGTGTGGTGAGGGTTGCTGTGAGGAGTTTATCAATGCATGCTGGACCTTCAAAGTCATAG 1146 0.4869 MESSSSSTTAIASTSLTAIQNSFDAVYSRYAREALDELPDNFTITDPSIPGHPIVFASQGFLKMTGYDRDEVVGRGGAMFQGERTSRRSVMDVREAVRNERSCQVSLLNYRKDGTPFWMLFHVSPVFGRDSGGVVHFVAVQVPLQGRRRRRRRSIGCRRGSDGGGGGGDYVFGCCRKEVCNDNGLEVELVSSMDHGLDHDTRELESDEPCEATDDEKRSAMVAMDNIFSVLTHYSEIKQSFVLANPHLPDMPIVYASDAFLKLTGYAKDEVLGRNCRFLSGPDTDDSTLYLIRESIRNQQPCTVRILNYRKDRSSFWNLLHISPVRDASGKVAYYVGVQIEEEHKNEDRQGLSPEKRQLSVVGVVRVAVRSLSMHAGPSKS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc225g00005 381 FunFam Protein TWIN LOV 1 isoform D 41 233 - -
Stsc225g00005 381 SMART pac_2 104 147 IPR001610 -
Stsc225g00005 381 SMART pac_2 303 343 IPR001610 -
Stsc225g00005 381 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 141 IPR035965 -
Stsc225g00005 381 CDD PAS 38 140 IPR000014 -
Stsc225g00005 381 PANTHER PROTEIN TWIN LOV 1 236 371 - -
Stsc225g00005 381 SUPERFAMILY PYP-like sensor domain (PAS domain) 249 339 IPR035965 -
Stsc225g00005 381 ProSiteProfiles PAS repeat profile. 253 299 IPR000014 -
Stsc225g00005 381 FunFam protein TWIN LOV 1 240 376 - -
Stsc225g00005 381 NCBIfam PAS domain S-box protein 253 339 IPR000014 -
Stsc225g00005 381 NCBIfam PAS domain S-box protein 53 140 IPR000014 -
Stsc225g00005 381 ProSiteProfiles PAC domain profile. 300 354 IPR000700 -
Stsc225g00005 381 CDD PAS 249 338 IPR000014 -
Stsc225g00005 381 SMART pas_2 29 102 IPR000014 -
Stsc225g00005 381 SMART pas_2 226 301 IPR000014 -
Stsc225g00005 381 Gene3D PAS domain 41 159 - -
Stsc225g00005 381 Gene3D PAS domain 240 376 - -
Stsc225g00005 381 ProSiteProfiles PAS repeat profile. 27 100 IPR000014 -
Stsc225g00005 381 Pfam PAS domain 50 141 IPR000014 -
Stsc225g00005 381 Pfam PAS domain 247 339 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc225g00005 Stsc-Chr225 65189 69234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc225g00005 230 372 AGC Kinase Gene Family AT5G58140 41.259 8.12e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc225g00005 - - adu:107489171 634.795