Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc225g00004 ATGAAGCATTGGCTGGAACTTAAAGAAAAAGCTATGAAGGCCAACCGAGAAGCAGCTTTTCCAAACCCATATGAAGTCACTAGAAACGTCACAAATACCATTGCCGAGGACGTAGCTGGGCACAAAAGCACAAGGAGGAGCTTGAAAGGTAAAAAGGCAAAACTTCCATGCAGTGCAAGCAACCCCATTGATAGATGTTGGAGATGCGACCCTAATTGGGAAAAAAATCGCAAAAAGCTTGCAACTTGTGTTATGGGTTTTGGAAGAAACACCATTGGAGGAATGAATGGTGAGTTTTACATCGTCACTGATCCCTCAGATGATGACCTTCTTGATCCAAAACCAGGAACCCTACGATATGCAGTTACAAGGGATAGACCCTTGTGGATCATCTTTTCACGTAACATGATCATTACGCTTCAGCAAGAGCTCTTGGTTAATAGTGATAAGACCATTGATGGAAGAGGAGCTGATATCCATGTTTGTAGGGGACGTGGCATCACAGTTAACTTTGCAAAAAACGTGATCATCCATGGAATCAAGATTTATGATATTCAACACGGTGATGGTGGGATTATTAGGTATGGTGAGGGAGAGAAAAGTGTTCATAGGAGGACACGTAGTGATGGTGATGGAATCAGCATTTATGGTTCTAGCGATGTTTGGGTTGACCATGTTTCCATGAGAAACTGTGAGGATGGTCTCATTGACGCTATTAGTGAATCTACTGCAATTACCATCTCCAATTCCCATTTTACAGACCATAATAAGGTGATGCTTTTTGGTGCTGATGATTCCGATGTGAAAGATAAAATAATGCAAGTCACGGTGGCCTTTAACCACTTTGGTAAAAGATTAGTTCAGAGAATGCCAAGGTGCAGATTTGGATTTTTCCATTTGGTAAATAATGACTATACTCATTGGGAAAAGTATGCTATTGGGGGTAGCATGCATCCCATCATTATTAGTGAGGGTAATCGATTCATGGCTTCTAATGACTCCAATACTAAAGAGGTAACAAGTAAGATAGGTGTGTTCAGAAATCCAGAGTTATGGCAATGGAAATCAATCAATGATGAGTTTATGAATGGAGCATTTTTTGTAGAATCTGGACCTGATCTAGTACTAAGCAATCTTGTCAAAGCTCAAGACATCTTGAAAGCAATTCCTGGCAGATTTGCGAGCTCCCTAACTGAATTTGCTGGTGCCCTTAGATGTAGGTATGGTCGACCTTGTTAA 1239 0.4092 MKHWLELKEKAMKANREAAFPNPYEVTRNVTNTIAEDVAGHKSTRRSLKGKKAKLPCSASNPIDRCWRCDPNWEKNRKKLATCVMGFGRNTIGGMNGEFYIVTDPSDDDLLDPKPGTLRYAVTRDRPLWIIFSRNMIITLQQELLVNSDKTIDGRGADIHVCRGRGITVNFAKNVIIHGIKIYDIQHGDGGIIRYGEGEKSVHRRTRSDGDGISIYGSSDVWVDHVSMRNCEDGLIDAISESTAITISNSHFTDHNKVMLFGADDSDVKDKIMQVTVAFNHFGKRLVQRMPRCRFGFFHLVNNDYTHWEKYAIGGSMHPIIISEGNRFMASNDSNTKEVTSKIGVFRNPELWQWKSINDEFMNGAFFVESGPDLVLSNLVKAQDILKAIPGRFASSLTEFAGALRCRYGRPC 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc225g00004 412 Pfam Pectate lyase 143 328 IPR002022 -
Stsc225g00004 412 PANTHER PECTATE LYASE 18-RELATED 13 410 IPR045032 GO:0030570
Stsc225g00004 412 Pfam Pectate lyase, N terminus 3 48 IPR007524 GO:0030570
Stsc225g00004 412 Gene3D - 60 405 IPR012334 -
Stsc225g00004 412 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Stsc225g00004 412 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Stsc225g00004 412 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Stsc225g00004 412 PRINTS Pollen allergen Amb family signature 383 406 IPR018082 -
Stsc225g00004 412 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Stsc225g00004 412 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Stsc225g00004 412 PRINTS Pollen allergen Amb family signature 83 100 IPR018082 -
Stsc225g00004 412 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Stsc225g00004 412 SMART amb_all 135 334 IPR002022 -
Stsc225g00004 412 SUPERFAMILY Pectin lyase-like 51 406 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc225g00004 Stsc-Chr225 53391 57097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc225g00004 3 412 Polysaccharide Lyase AT1G14420 52.941 2.00e-155 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc225g00004 K01728 - gmx:100796307 516.924