Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc225007g00001 ATGGTGGTGGGTCCAAATGGGAAGGTAATTCAATTGGGTCAAGTTGATGGAGATGCAATCAGACTGGTGACTGCTTCAAAGATATGGATTGATCATAATACACTCCATGATTGCGAAGATGGTCTTCTTGATGTTACTCGAGGTTCAACTGATGTAACCGTCTCCAATAACTGGTTC 177 0.4237 MVVGPNGKVIQLGQVDGDAIRLVTASKIWIDHNTLHDCEDGLLDVTRGSTDVTVSNNWF 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc225007g00001 59 Gene3D - 2 59 IPR012334 -
Stsc225007g00001 59 SUPERFAMILY Pectin lyase-like 15 59 IPR011050 -
Stsc225007g00001 59 PANTHER PECTATE LYASE 18-RELATED 2 59 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc225007g00001 Stsc-Chr225007 1 234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc225007g00001 2 59 Polysaccharide Lyase AT5G09280 82.759 1.61e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc225007g00001 K01728 - gmx:100811216 115.161