Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc223g00003 ATGGGATCACCAGAATCAAATTTGCCACCAGGTTTTAGGTTCCACCCAACCGATGAAGAACTCATTCTTCACTACCTTAGGAAGAAGGTAGCATCCATACCCTTGCCTGTTTCCATCATTGCTGAGGTTGATATCTACAAATTGGATCCATGGGAATTACCAGCTAAGGCTGCGTTTGGTGAGAAAGAATGGTACTTCTTCAGCCCAAGGGACCGCAAATATCCAAACGGTGCGAGGCCAAACAGGGCAGCTGCTTCAGGGTACTGGAAAGCCACCGGTACCGACAAGACCATCGTGGTGTCGCCGGCCACCGTCACACGTAGAGCAGGCCAAGAGAGCAGTGTTGGTGTGAAGAAGGCTCTTGTTTTCTACAAAGGAAGGCCTCCAAAGGGTATTAAAACCAATTGGATCATGCACGAATATCGCCTTGTAGACAACAATAGGCCCATTAAGCTCAAAGACACCTCCATGAGGTTGGATGACTGGGTTCTGTGTCGGATCTATAAGAAATCCAAATTCTCACTATCTTCACCGGAGGAATCATCACCGTCGAGTGTAATGGGCGATCAAATTCAAGGAGCAGATGAGGATAGTTTATTCAAAGAAACCATTTTGAAGAGTCCAATTCCACCGCCGTCGCCATTGCCGCCGCCTCCGTCACTGCTGTCTCAAAAATCTGTGTCCTTCTCAAACCTGTTAGATGCCATGGACTACTCCATGCTCAGCTCCATCTTATCTGAGAACAACAGCAGCCTTGATCATCAGCAACAATACTCATTACAATCTTCACAGATCAACACCAACCAATTGAACCATTCATCATCATTGCTCCCCAACAACATGGAGAACAGTAGTTACAGCAACACGATGATGATGAGGTCATCATCAAAACGCCAGCTTTCAAACATGGAGGATGAAACAACGACAGTGTTGCACCCATCAAAGAAGTACCATCACAACCACCACCACCACCTTATGGGTTCTTCTTCTTGCAGCTTCCCTAATAATATTAGCAACACAATAAACACTGCACAATACGAGAACCCACAATGGAACTACCTTGTCAAGCAATCTTTCTTGAACCAGCAGTTGCTACTCGGTCCTCATCTTCAATTTCAAGGTTAG 1125 0.4596 MGSPESNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKLDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVVSPATVTRRAGQESSVGVKKALVFYKGRPPKGIKTNWIMHEYRLVDNNRPIKLKDTSMRLDDWVLCRIYKKSKFSLSSPEESSPSSVMGDQIQGADEDSLFKETILKSPIPPPSPLPPPPSLLSQKSVSFSNLLDAMDYSMLSSILSENNSSLDHQQQYSLQSSQINTNQLNHSSSLLPNNMENSSYSNTMMMRSSSKRQLSNMEDETTTVLHPSKKYHHNHHHHLMGSSSCSFPNNISNTINTAQYENPQWNYLVKQSFLNQQLLLGPHLQFQG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc223g00003 374 Pfam No apical meristem (NAM) protein 9 143 IPR003441 GO:0003677|GO:0006355
Stsc223g00003 374 ProSiteProfiles NAC domain profile. 8 170 IPR003441 GO:0003677|GO:0006355
Stsc223g00003 374 FunFam NAC transcription factor 56 17 175 - -
Stsc223g00003 374 SUPERFAMILY NAC domain 5 170 IPR036093 GO:0003677|GO:0006355
Stsc223g00003 374 Gene3D NAC domain 17 174 IPR036093 GO:0003677|GO:0006355
Stsc223g00003 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc223g00003 Stsc-Chr223 40229 42280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc223g00003 4 374 NAC Transcription Factor Family AT3G04070 46.524 1.80e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc223g00003 NAM 9.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc223g00003 - - ahf:112754912 543.502