Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2239g00003 ATGCAGTGTTCCCCAAGGCTGAAGAAACTGCGGACAGGTCTGCAGGCTGCATCATCCAGTCACCTCATCACTGGGATGGCTGCAGGAGGCACTGGGTTTATGGACTTGGAGGAGTCTGTAAGATCGCCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATATTATGGACGTGACACGGTAACTAAGCAGCCAGGTTTTGAGATGATCAGTTCTCCCATTCATCCAAATCTTGCATCGGCCGGAGCAAGAAAGATGACTGCTGCTGATCTTATGAGGGTTCACCCTCCTAGTTATGCAGGCTTCGCGGAACCTAATAATAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCACTAAGGTCCCTGACAGGAAAGGTTGATATAAGCCTCAATGCTTGGGGTAAACCAAGTAGTGCAAGTTGCAATCCTTTCAACCTGCATCAAGCTACCAGACCAAAATTTGACTCTTTAGGATCAGAAGTCCTTCAAACTGCATTTTTTCCTTATGGTGATCTTCACAAAGCTGGTCATGGTAGCAGCATGTTATGCTCTAAACCGTCGAGTTTCCAAAGAGATAGTGCCCCTTTTAACACTCCTCTGACTCAGGCAGGGATCATTAGAAATGAAATTGGAAGGTCTGGCCCCTCAATCATGCATGAGCAGAAGCTGCCGGAGAATGTTTCCATGGTTGCATCTTTAGGGGCAAACAGCATGAGGATGCCAGTTCCGGATGAAGACAATCTGAAGGGGAAGATAAATGGATGTAAACTATTTGGAGTTGCCTTGTGTGGAGAAACTACCACCCAAAATATACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACACTGACCTCTTGACTGAACTAGAGAGACTGTTTGGCATGGAAGGCCTACTTAGAGATCCTGTTAAGGGATGGAGGATCCTGTACACGGACAGCGAGAATGACATCATGGTTGTCGGGGATGACCCTTGGCATGAGTTCTGTGATGTGGTATCCAAGATTCACATATATACACAAGAGGAAGTGGAGAAGATGACAATTGGTATTACCAGTGATGATACACAGAGCTGTTTGGAACAGGCACCAGTAAATATGGAGGCTTCTAAGTCTTCTTCTGTGGGTCAGCCAGATTCCTCCCCAACAGTAGTTAGAGTCTAG 1233 0.4599 MQCSPRLKKLRTGLQAASSSHLITGMAAGGTGFMDLEESVRSPKVLQGQENTGFMSLYYGRDTVTKQPGFEMISSPIHPNLASAGARKMTAADLMRVHPPSYAGFAEPNNRFPRVLQGQEICPLRSLTGKVDISLNAWGKPSSASCNPFNLHQATRPKFDSLGSEVLQTAFFPYGDLHKAGHGSSMLCSKPSSFQRDSAPFNTPLTQAGIIRNEIGRSGPSIMHEQKLPENVSMVASLGANSMRMPVPDEDNLKGKINGCKLFGVALCGETTTQNIQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYTDLLTELERLFGMEGLLRDPVKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGITSDDTQSCLEQAPVNMEASKSSSVGQPDSSPTVVRV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2239g00003 410 Gene3D - 278 371 - -
Stsc2239g00003 410 MobiDBLite consensus disorder prediction 389 410 - -
Stsc2239g00003 410 SUPERFAMILY CAD & PB1 domains 285 361 - -
Stsc2239g00003 410 FunFam Auxin response factor 277 371 - -
Stsc2239g00003 410 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 184 371 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc2239g00003 410 ProSiteProfiles PB1 domain profile. 282 366 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2239g00003 Stsc-Chr2239 6390 8621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2239g00003 1 410 B3 DNA Binding Superfamily AT5G60450 45.763 6.49e-85 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2239g00003 - - ahf:112706773 749.199