LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc221g00013	ATGGCCGACGATGGAGAGGCGGCGTCGTCATCCTTATCGGAAGGCATGTATGATGCTTTTCTCAGCTTTAGAGGCGAAGATACAAGGTACCTCTTCACAGACTATCTCTACCATAGACTGGCAAAAATTGAAAAGCTAAAAGTGTTCAGAGATGAACCGGAACTGAAAATGGGTGACCAAGTGGATTCTACTCTGATTGAAGCAATTAAAAGATCAAGGATGTTCATTGTTGTGATGAGTCCAAATTACGTATCTTCGTCATGGTGCCTCATGGAGCTAGAGGAGATGCTCAAGTACTCCAACAATGGAACAAAACGACCAATTTTCCCAGTTTTTTATGACGTGGAGCCCGCAGAAGTGAGACATCAGATTAGCAAGAAATCTAAGAAAGCCATGAAGGATCATGAAAGAAGAGTAGGCATAAACAAGGTGAAAGAGTGGAAGTCAGCTCTATCTACACTTTGTGGGCTAAGCGGACAACACATTGTTCGGAATAAAGGGTATGAAACTCAGGTCATGGGAGAGATTGCTGAAAAGGTCTTGGCAAAGCATCGGGAGATCAAGCAACTATTGAGTAGATTTGATTCTCAATTTGAAGCAGTGGAATCGCTTTTGAACCTTGAATCTCGTGATACTCTTCTGATGGTGGCAATTTATGAAGAAGATGCTAAAATAGACATAACAACATTTGCTTTTGAGCTGTACTATAAGATCAAGTATGAGTTCAAAGACGCAAGCTTTCTTCTTGATTTGAGTAGAAAATTAAGGGAAGATGCTAATGGCTTGGAAAATCTGCAAAATGAGCTTCTTTCTGATATGGGTGTGGAAGTAAGAACCATGACGGGTAGCACATCTAGTGGATCCTGGGAAATAATAAAGCAGAAGTTGCGGCATAAAAGAGTGCTTCTGGTTCTGGATGGTGTTGATACTCAACAGCATTTAGAGTTGCTGGCAGGAGGAGGTGCTTGGTTTGGTGGTGGCAGTAGGATCATCATAACAACAGAAGTGAAAGATCTCTTACATGAGATAGATGGTGTGGAGATTTGGACACATCGCATTTGTGAAGATGATGAGTTCGACGTAAACAGAGGAAGCTCTACTATGATGGAAGAAAATGTAGTGGGATTGGAGAAAGACTTCCTTGAGGTAATGAATCAACTGAAGGATAAAGATTCTCCTGGGAATGTGGTTTCTGTTGTTGGGATGGGTGGGTCGGGCAAGACTACCCTTGCTCAAAAGGTCTACAATAGCAATGAGGCCAGAAAGTTATTTCCTTGTCGTGCATGGGCAACCATTTCCCAAAAGCCCATCTTGAGCCAAGTTTTTAGAAACCTTCTCAACTGTTTGGAACCCAACTCTACACATGAAAATTCAAGTGAAGAGGAGTTGAAGAAGAAGGTGAGAAAATATTTGAATGGAAAAAAGTACTTGGTAGTCCTTGATGATGTTTGGGACACTGATAACCCCTGGTTTTCTCTAAGGGATTGTTTCCCAAGAATCAAGAATGGTAGCATGATACTAGTAACTACCCGCGATGATCGAGTGGCCAACGTTTTAGAGTCAAAGAATCCTCATCTCACGGTTTCCCTTTTGAATAAAAAAGAAAGTTGGGAACTGTTTTGCAATACGGTGTTCTACAGAACAACGTGTCCTCCGGAACAAGAAAGCATTGGTAGATCAATTGCTGAAAGTTGTAACGGTTTACCATTGCTTATCAAAACCACAGCCGGGATTGTTGCCAAGAGGGAGAGATCAGTGGAGGCTCTGGAACAAATCAAGAAGCTGTTCCCTTATTGGTCTATTTCTGAGGACAAGAATGGTAAGAAGATGATGGAGACATTGAAGCTTAGCTACGATGATCTGTCTGAGCAAATGAAGCCATGTTTCCTATATCTTGGTGTGTTTCCTGAAGATGAAGAGATTTTGGTGAGAGACTTAATCCATATGTGGATTGCAGAAGATTTCATAAAGCCAATCATCCAAAGTGGAAGATCAAAGATAGAACCTGAAGACATTGGGGAGGAATACCTGAAGGAGCTAGTGGATCGTAACTTGGTACAAGTGGTGAAGAGGAAGAGTGATGGGAAAGGCGTGAAAACAGTTAAGATCCATGATGTGATCCGAGAAGTGTGCATATCAATGAGTAACAACAAAGCTTTTAGTTTGTTGTTTCCAGAGGATATAGGAAGACGCCATGTATGTTTGGTAACACGACGTGACCAATCAAGAACTTGTTCCTTGTTCCTTTTTGGACATAAGGAGTGGAGGTCTCTTCCTATTCCACAAGACTGCCAAGTTATGAACGTGCTATATTTGGAAGGATTCTGTGGTATTCTAACTTATCCTGAGTATTTGATGAACAAGTCGAAAATCATCAGGTTCATTAAAGGGCACTCTGCAATTCATTTATTAGTAGATGCAGGAGGGGTTACAGATAGAATGCAGAATCTGCAAACCCTATTGCAGGTGCATGCGGATTCACAGATGTGGTTCTTATTCAACAATGGCTACTTTTCCAACTTGAGAACACTCGGTTTACTGATAAGTAATAATGATGAAGTTGAATTAGTAGAAACAAACTTGAGGAGCCTGGACCACTTAAACGAGCTATGTAAACTGGAACTCAGATGTGATCTCATTTTTGGGTTGAATGCAAGGGTTTCATTAGGTAAAATTGCATTTCCTTCCAATCTTACCAGCATTACCTTGCGTCGTGTTTTTGATTTGAAGTACGAAGACATGAATGCTTTGGGACGAATTCCCGGACTTGGAAATTTAAAATTAGTACGAGTATCTTGTTCCGAAAATATCCTTCATTGTGGCAGTGCTGGGAGCTTTCCCCAGCTTCAAGTGTTTATCATGGATCTTGGGAAAGTCGAACATGTTATATTCGAAGATGGTGCAATGCCTAAACTTCGACGTGCGGTCTTTCATTGGTGCAATGGCTTGAAGTTTAACTGCCTTCCTGAACGAATGCTTTCCTTGGGTAGTAACTTGCATTTTGAAGAATACAGATTAGATTAG	3024	0.4117	MADDGEAASSSLSEGMYDAFLSFRGEDTRYLFTDYLYHRLAKIEKLKVFRDEPELKMGDQVDSTLIEAIKRSRMFIVVMSPNYVSSSWCLMELEEMLKYSNNGTKRPIFPVFYDVEPAEVRHQISKKSKKAMKDHERRVGINKVKEWKSALSTLCGLSGQHIVRNKGYETQVMGEIAEKVLAKHREIKQLLSRFDSQFEAVESLLNLESRDTLLMVAIYEEDAKIDITTFAFELYYKIKYEFKDASFLLDLSRKLREDANGLENLQNELLSDMGVEVRTMTGSTSSGSWEIIKQKLRHKRVLLVLDGVDTQQHLELLAGGGAWFGGGSRIIITTEVKDLLHEIDGVEIWTHRICEDDEFDVNRGSSTMMEENVVGLEKDFLEVMNQLKDKDSPGNVVSVVGMGGSGKTTLAQKVYNSNEARKLFPCRAWATISQKPILSQVFRNLLNCLEPNSTHENSSEEELKKKVRKYLNGKKYLVVLDDVWDTDNPWFSLRDCFPRIKNGSMILVTTRDDRVANVLESKNPHLTVSLLNKKESWELFCNTVFYRTTCPPEQESIGRSIAESCNGLPLLIKTTAGIVAKRERSVEALEQIKKLFPYWSISEDKNGKKMMETLKLSYDDLSEQMKPCFLYLGVFPEDEEILVRDLIHMWIAEDFIKPIIQSGRSKIEPEDIGEEYLKELVDRNLVQVVKRKSDGKGVKTVKIHDVIREVCISMSNNKAFSLLFPEDIGRRHVCLVTRRDQSRTCSLFLFGHKEWRSLPIPQDCQVMNVLYLEGFCGILTYPEYLMNKSKIIRFIKGHSAIHLLVDAGGVTDRMQNLQTLLQVHADSQMWFLFNNGYFSNLRTLGLLISNNDEVELVETNLRSLDHLNELCKLELRCDLIFGLNARVSLGKIAFPSNLTSITLRRVFDLKYEDMNALGRIPGLGNLKLVRVSCSENILHCGSAGSFPQLQVFIMDLGKVEHVIFEDGAMPKLRRAVFHWCNGLKFNCLPERMLSLGSNLHFEEYRLD	1007

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc221g00013	1007	PRINTS	Disease resistance protein signature	565	579	-	-
	Stsc221g00013	1007	PRINTS	Disease resistance protein signature	470	484	-	-
	Stsc221g00013	1007	PRINTS	Disease resistance protein signature	396	411	-	-
	Stsc221g00013	1007	Pfam	NB-ARC domain	378	620	IPR002182	GO:0043531
	Stsc221g00013	1007	FunFam	Probable disease resistance protein At1g61300	357	524	-	-
	Stsc221g00013	1007	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	228	345	IPR027417	-
	Stsc221g00013	1007	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	159	IPR035897	-
	Stsc221g00013	1007	Gene3D	-	226	348	IPR027417	-
	Stsc221g00013	1007	Gene3D	-	359	529	IPR027417	-
	Stsc221g00013	1007	Coils	Coil	248	268	-	-
	Stsc221g00013	1007	Gene3D	-	623	713	IPR036388	-
	Stsc221g00013	1007	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	343	IPR044974	GO:0006952
	Stsc221g00013	1007	ProSiteProfiles	TIR domain profile.	15	184	IPR000157	GO:0007165
	Stsc221g00013	1007	SMART	till_3	16	157	IPR000157	GO:0007165
	Stsc221g00013	1007	Gene3D	-	530	622	IPR042197	-
	Stsc221g00013	1007	Gene3D	-	9	188	IPR035897	-
	Stsc221g00013	1007	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	363	632	IPR027417	-
	Stsc221g00013	1007	Pfam	TIR domain	17	185	IPR000157	GO:0007165
	Stsc221g00013	1007	FunFam	Probable disease resistance protein At1g63360	618	713	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc221g00013	Stsc-Chr221	40947	44576	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc221g00013	66	334	WRKY Transcription Factor Family	AT4G12020	26.103	7.94e-16	80.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc221g00013	-		-	aip:110271380	912.524