LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc221g00004	ATGGCCGACAATGGAGAGGCGTCGTCGTCATCCTTATCAGAAGGCATGTATGATGTTTTTCTGAGCTTTAGAGGCGAAGATACAAGGTACATCTTCACAGACCATCTCTACCATAGACTGACAGAAATCGGGAAGCTAAAAGTGTTCATAGACGAACCAGGTCTGGAAATGAGTGACGAAATCAAAGCTACTCTGATGGAAGCAATTAAAAGATCAAGGATGTTCATTGTTGTCATGAGTGAAAACTATGTATCTTCGTCATGGTGCCTCATGGAGCTAGAGGAGATGCTCAAGTACTCCAACGATGGAAAAAAACGGCCAATATTCCCAGTTTTTTATTACGTACTGCCAGCAGAAGTGAGATATCAGATTAGCGAGAAATCTAAGAAAGCCATGGCGGATCATGAAATGAGAGTAGGCGCAGACAAGGTGAAAGCGTGGAACTCGGCTCTATCAAAAGTTTGCGACATAAGCGGACAACACATTGTTGAGAATAAAGAGTATGAAACTAAGGTCATGAGAGAGATTGCTGAAAAAGTCTTAGCGAAACATCGGGAGATCAAGCTACTGCTAGATAGATTTGGTTCTCAACTTGAAGCAGTGGAATCGCTTTTGAACCTTGAATCTCGCGAGACTCTTAAAATGGTGTCAATTTACGAAGAAGACGGTAAAATAGACACGACTACTTTTGCTTTTGAGCTTTACTATAAGATCAAGTATGAATTCAAATCGGCAAGTTTTCTTCGTGATGTTAGTAAACAGCTATGGGAAAACACCGATAATGGCTTGAAAAATCTTGAAAAGGAGCTTCTTTCTGATATGGATGTGGAGGAAAGCACAAAGCACAGGTTGCAGCATAGAAGAGTGCTTGTGGTTCTGGAAGGGGTTGATAGTAAAGAGCATCTGGATTTGCTATTAGAGGAACTGAGAATAGGTGCTCGGTTCGGTGGTGGCAGTAGGATCATCATAACAACAGAAGTCAAAGATCTCTTAGATGAGATATATTTTGTCGATATTAGGACACATTGCATTCGTGAAGATGAGTTCGAAGGAAGCAGAGGGATGGGAGAAATTGTAGTGGGATTGGAGAAAGACTTCGATGAAGTAATCAATCAACTCAAGGATAAAGATTCTCCAGGGAATGTGGTTTCTATTGTTGGCATGGGTGGGTTGGGCAAGACTACCCTTGCTCGAAAGGTCTACAATAGCAATAAGGCCAGACAGTTATTTCCTTGTCGTGCATGGGCAACCATTTCCCAGAAGCCCACGTTGATCCAAGTATTGAGAGACCTTCTCAAGTGTTTGAAGGTACCCGAATCTGAATACGAAAAGCTAAGTGATGAAGGGAAGTTGAAGGAGAAGGTGAGAAAACGTTTGATTGGGAAAAAGTACTTGGTTGTTCTTGACGATGTTTGGGACACTGATAACCCTTGGGGTTCCCTAAGGAGTTGTTTCCCAACAAACAAGAATAATGGTAGCATGATACTCGTGACTACCCGCGATGATCGAGTGGCCAACGCTTTAAGTTCAAAGAATCCTCATCTCACGGTTTCCTTTATGAATGAAGAAGAAAGTTGGCAACTGTTTCGCAATGAGGTGTTCTACAGTGAAATGTGTCCTCCGGAACTAGAAGATATTGGTAGATCAATTGCTAAAAGTTGTAATGGTTTACCATTGGTTATCAAAACCACAGCCGGGATTGTGGCGAAGAGGGAGAGATCAGAGGAGGCGTGGGAACAAATCAAGAAGGTGCTCCCTTATTGGTCTATTGCTGAGGACAAGGATGGTAAGAAGATGATGGAGAGATTGAAGTTTAGCTACGATGATCTGTCTGAGCAAATGAAGCCATGTTTCCTATATCTTGGTGTGTTTCCTGAAGATGAAGAGATTTTGGTGAGAGAATTAATCTGTATGTGGATGGCAGAAGATTTCATAAAGGCAATAATCCAAAGTGGAAGATCAAAGATAGAAGCTGAAGACATTGGGGAGCAATACCTGAAGGAGCTAGTGGATCGTAACTTGGTACAAGTGGTGTCGAGGAGGAGTGATGGCAAAGGCGTGAAAGCAGTTAAGATCCATGATGTCATCCGAGAATTGTGCATATCAATGAGTAACAACAAAGCTTTTAGTTTGTCCTTTCCAGAGGAGTATATAGGAGGATGCTATGTATGTTTGGTAACACGCCGTGATCAATCAAGAACTTGTTCCTTGATCATTTATGGAAATAAGCACTGGTGGTCTCTTCCTATTCCAGAAGACTGCCAAGTTATCAATGTGCTATATTTGGAAGGATTGGATGGTACTCTACCTGATCGTGAGTATTTGATGAACAAGTTGAAAAGCATCAGGTTCTTGAAAGGGGATTCTTATGATCTAATTGATTTATTGAATAATGTTCAGGGTTTACAAACATTATATTCAGAGCTCGCAGGCAAAGTAGTTATTCATGAGGGGTTAAAGCAACTAAGACATATTATTTTTAATTACTCTGAAATTAATTTTTTAGCAGATGCAGGAGGGGTTACACATAGAATGCAGAATCTGCAAACCCTATTGCGCGTGCGTCCGGATTCACAAATGTGGTTCTTATTCAACAATGGCTACTTTTCCAACTTGAGAAGACTGGGTTTAGTGATAAGTAATGGTGATGAAGTTGAATTAGTAGAAACATACTTGAGGAGCCTGGACGGCCTAAGCAAGCTACGTAAACTGGCACTCAATTGTGGTTACAATACATGGGTTTCATTAGGTAAAATTGCATTTCCTTCCAATCTTAGCAGCATTACCTTGAGTCGTGTTTTTGATTTTAAGTACGAAGACATGAATGCTTTGGGACGAATTCCCGGACTTGGAAATTTAAAATTAGTAGGAGTATCTTGTTCCGAAGATATCTTTCATTGTGGCAGTGCTGGGAGCTTTCTCCAGCTTCAAGTGTTCATCATGAAGGGTGTGATAATCGATCATGTTATATTGGAAGATGGTGCAATGCCTAAACTTCAACGTGCGGTCTTTCATCACTGCACTGGCTTGAAGTTCAACTGCCTTCCTGAACGAATGCTTTCGTTGGGTAGTAACTTGCATTTTGTAGAAGAAGAAGAGGAGGAGGAGGAGGATGATTGA	3120	0.4122	MADNGEASSSSLSEGMYDVFLSFRGEDTRYIFTDHLYHRLTEIGKLKVFIDEPGLEMSDEIKATLMEAIKRSRMFIVVMSENYVSSSWCLMELEEMLKYSNDGKKRPIFPVFYYVLPAEVRYQISEKSKKAMADHEMRVGADKVKAWNSALSKVCDISGQHIVENKEYETKVMREIAEKVLAKHREIKLLLDRFGSQLEAVESLLNLESRETLKMVSIYEEDGKIDTTTFAFELYYKIKYEFKSASFLRDVSKQLWENTDNGLKNLEKELLSDMDVEESTKHRLQHRRVLVVLEGVDSKEHLDLLLEELRIGARFGGGSRIIITTEVKDLLDEIYFVDIRTHCIREDEFEGSRGMGEIVVGLEKDFDEVINQLKDKDSPGNVVSIVGMGGLGKTTLARKVYNSNKARQLFPCRAWATISQKPTLIQVLRDLLKCLKVPESEYEKLSDEGKLKEKVRKRLIGKKYLVVLDDVWDTDNPWGSLRSCFPTNKNNGSMILVTTRDDRVANALSSKNPHLTVSFMNEEESWQLFRNEVFYSEMCPPELEDIGRSIAKSCNGLPLVIKTTAGIVAKRERSEEAWEQIKKVLPYWSIAEDKDGKKMMERLKFSYDDLSEQMKPCFLYLGVFPEDEEILVRELICMWMAEDFIKAIIQSGRSKIEAEDIGEQYLKELVDRNLVQVVSRRSDGKGVKAVKIHDVIRELCISMSNNKAFSLSFPEEYIGGCYVCLVTRRDQSRTCSLIIYGNKHWWSLPIPEDCQVINVLYLEGLDGTLPDREYLMNKLKSIRFLKGDSYDLIDLLNNVQGLQTLYSELAGKVVIHEGLKQLRHIIFNYSEINFLADAGGVTHRMQNLQTLLRVRPDSQMWFLFNNGYFSNLRRLGLVISNGDEVELVETYLRSLDGLSKLRKLALNCGYNTWVSLGKIAFPSNLSSITLSRVFDFKYEDMNALGRIPGLGNLKLVGVSCSEDIFHCGSAGSFLQLQVFIMKGVIIDHVILEDGAMPKLQRAVFHHCTGLKFNCLPERMLSLGSNLHFVEEEEEEEEDD	1039

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc221g00004	1039	SUPERFAMILY	L domain-like	688	1018	-	-
	Stsc221g00004	1039	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	160	IPR035897	-
	Stsc221g00004	1039	PRINTS	Disease resistance protein signature	382	397	-	-
	Stsc221g00004	1039	PRINTS	Disease resistance protein signature	458	472	-	-
	Stsc221g00004	1039	PRINTS	Disease resistance protein signature	554	568	-	-
	Stsc221g00004	1039	FunFam	Probable disease resistance protein At1g61300	348	513	-	-
	Stsc221g00004	1039	Pfam	NB-ARC domain	363	609	IPR002182	GO:0043531
	Stsc221g00004	1039	Gene3D	-	354	518	IPR027417	-
	Stsc221g00004	1039	Gene3D	-	185	337	IPR027417	-
	Stsc221g00004	1039	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	333	IPR044974	GO:0006952
	Stsc221g00004	1039	Gene3D	-	9	184	IPR035897	-
	Stsc221g00004	1039	Pfam	TIR domain	17	183	IPR000157	GO:0007165
	Stsc221g00004	1039	ProSiteProfiles	TIR domain profile.	15	184	IPR000157	GO:0007165
	Stsc221g00004	1039	SMART	till_3	16	157	IPR000157	GO:0007165
	Stsc221g00004	1039	Gene3D	-	519	611	IPR042197	-
	Stsc221g00004	1039	Gene3D	-	612	701	IPR036388	-
	Stsc221g00004	1039	FunFam	Probable disease resistance protein At1g63360	607	702	-	-
	Stsc221g00004	1039	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	358	621	IPR027417	-
	Stsc221g00004	1039	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	228	344	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc221g00004	Stsc-Chr221	12939	16628	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc221g00004	17	337	WRKY Transcription Factor Family	AT4G12020	26.331	5.83e-16	81.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc221g00004	-		-	aip:107637424	900.582