Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc221g00001 ATGGGTGACCAAGTGGATTCTACTCTGATGGAAGCCATTAAAAGATCAAGGATGTTCATTGTTGTCATGAGTGAAAACTATGTATCTTCCTCATGGTGCCTCATGGAGCTAGAGGAGATGCTCAAGTACTCCAACAATGGAACAAAACGCCCAATTTTCCCTATTTTTTATCACGTGGAGCCCGCAGAAGTGAGACATCAGATTAGCGAGAAATCTAAGAAAGCCATGGAGGATCATGAAAGAAGAGTAGGCATAGACAAGGTGAAAGAGTGGAAGTTAGCTCTGTCTACACTTTGCGGGCTAAGCGGACAACACATTGTTGTGAATAAAGAGTATGAAACTCAGGTCATGGGAGAGATTGCTGAAAAGGTCTTAGCAAAATATCGGGAGATCAAGCAACTGTTGAATAGATTTGATTCTCAAGTTGAAGCAGTGGAATCGCTTTTGAACCTTGAATCTCGAGATACTCTTGGTATGGTGGGAATTTACGAAGAAGATGCTAAAATAGACATAACAACATTTGCTTTTGAGCTATACTATAAGATCAAGTATGAGTTCAAAGCGGCAAGCTTTCTTCTTGATGTGAGCAGAAAATTAAGGGAAGATGCCAATGGCTTGGAAAATATACAAAAGGAGCTTCTTTCTGATATGGGTGTGGATGTAAGCACCATGATGGGTAGCACATCTAGTGGATTCTCGGAAATAATAAAGCAGATGTTGCGGCATAAAAGAGTGCTTCTTGTTCTGGATGGTGTTGATTCTCAACAGCATTTAGAGTTGCTGGCAGGAAGAGGTGCTTGGTTTGGTGGTGGCAGTAGGATCATCATAACAACAGAAGTGAAAGATCTCTTATATGAGATACATGGTGTCGAGATTAGGACACATTGCATTCGTGAAGATGAGTTCCACGGAAACAGAGGAAGCTCTACCATGATGGAAGAAAATGTAGTGGGATTGGAGAAAGACTTCCGTAAGGTAATGAATCAACTCAAGGATAAAGATTCTCCTGGGAATGTGGTTTCCGTTGTTGGCATGGGTGGGTCGGGCAAGACTACCCTTGCTCATAAGGTCTACAATAGCAGCGAGGCCAGACAGTTATTTCCTTGTCGTGCATGGGCAACCATTTCCCAAAAGCCCATCTTGACCCAAGTTTTTAGAAACCTTCTCAAGTGTTTGAAGGTACCCAAATCTGAATATGAAAATTCAAGTGATGAAGAGGAGTTGAAGGAGAAGGTGAGAAACTGTTTGAATAGGAAAAAGTACTTGGTAGTCCTTGACGATGTTTGGGCCACTAATAACCCGTGGCGTGCTCTAAGGGGTTGTTTCCCAAAAAACAATGGTGGCATGATACTAGTAACTACCCGCAATCATCGAGTGGCCAACGCTTTAGAGTCAAAGATTCCTCTTCTCACGGTTACCCCTATGGATGAAGAAGAAAGTTGGCAACTGTTTCGCAACGAGGTGTTCTACAGCACAATGTGTCCTCCGGAACTTGAAGGTATTGGTAGATCAATTGCTGAAAATTGTAATGGTTTACCATTGCTTATCAAAACCACAGCCGGGATTGTTGCCAAGAGGGAGAGATTAGTGGAGGAGTGGGAAGAAATCAAGAAGCTGCTCCCTTATTGGTCTATTGCTGAGGACAATGATGGTAAGGAGATGATGAAGAGATTGAAGCTTAGCTATGATGATCTGTCTGAGAAAATGAAGCCATGTTTCCTATATCTTGGTGCGTTTCCTGAAGATAGTGTGATTAGGGTGAGAGAGTTAATCTGTATGTGGATGGCAGAAGAGTTCATAAAGCCAACAATCCAAACTGGAAGATCAGCGATAGAACCTGAAGACATTGGAGAGCAATACCTAAAGGAGCTAGTGGATCGTAACTTGGTACAAGTGGTAAAGAGGAGGAGTGATGGCAAAGGCATAAAAAGTGTTAAGATCCACGATATCATCAGAGAACTGTGCATATCAGAGAGTAACAGTAACAAAGCTTGTTTGGTAACACCACCTGATCAATCAAGTACTTTTTCCTTGTTAGTTCACGGACATGTCTTTGGAAAGACTCCTCTTATTCCGGATAACTGCCAAGTTATGAACGTGCTATATTTGAAAAGAATTTCTTGGAGTAGTATAATTTTTCCTGAGAAGTTGAAAAGCATCAGGTTCTTGCAAAAAAAGGATAGAATCTCAGACTTTTTGGAGATTCGGGATATGCAATCATTGTTTTCTTTGATACTTCAGAATCTACAATCATTATGTGTACGATCCACTTCGAGGGAATATCAAATAAGTATTGGTGAGGGGTTAAAGCAACTAAGACATTTTCGTGTTCACTCTGGAAGCTATTTATTAGAGGATGCAGAAGGGGTTATAGATAAAATGCAGAATCTGCAAACCCTATTTTATGTGTATGCGGATTCAGAAATGGGGATCTTACTGGGCAATGGCTACTTTGCCAACTTGAGAACACTCGGTTTAATGATCAGTGAAGATGAAGTTCAATCACTAGAAGAAAACTTGAGGGGCCTGGACAAACTAAGCAAGCTTTGTAAACTGAAACTCAACTTTGATTGCAGTACAAGGGTTTCTTCTTTAGATAAAATTGCATTTCCGTCGAATCTTAGCAAGATTACCTTGTCACAGTTTAGTTATTTGCAGGATCAAGACATGAATGCTTTGGGACGAATTCCCAACCTTAAAATTCTAAAATTCTATTTGGTAAGTTGTACCGAAAATATCCTTCGTTGTGGTAGTGCTGGGAGCTTTCCGCAGCTTCAAGTGTTTATCCAGAAATCAGTGGAAGTCACAAGTGTTACATTAGAAAATCGTGCAATGTCTAATCTTCAACGTGCGGTCTTCCATTTGTGCCGTGGCTTGAAGTACAACTGCCTTCCTGAACAAATGCATTGCTTGGGCAGAAACTTGCGTTTTATTCCTCATGAGGATGATGATGATGATTTGCAGTTACGAGATGATGATTTGCAGTCACGAGATGATGATGATGGCATAGTTTATATGTATGATAGTGATCCTGATGATGATCCTGATGATGATGATGATGATGTTTATTTGGCAGTAACTTGCATTTTGAAGAACATTTACTAG 3105 0.4071 MGDQVDSTLMEAIKRSRMFIVVMSENYVSSSWCLMELEEMLKYSNNGTKRPIFPIFYHVEPAEVRHQISEKSKKAMEDHERRVGIDKVKEWKLALSTLCGLSGQHIVVNKEYETQVMGEIAEKVLAKYREIKQLLNRFDSQVEAVESLLNLESRDTLGMVGIYEEDAKIDITTFAFELYYKIKYEFKAASFLLDVSRKLREDANGLENIQKELLSDMGVDVSTMMGSTSSGFSEIIKQMLRHKRVLLVLDGVDSQQHLELLAGRGAWFGGGSRIIITTEVKDLLYEIHGVEIRTHCIREDEFHGNRGSSTMMEENVVGLEKDFRKVMNQLKDKDSPGNVVSVVGMGGSGKTTLAHKVYNSSEARQLFPCRAWATISQKPILTQVFRNLLKCLKVPKSEYENSSDEEELKEKVRNCLNRKKYLVVLDDVWATNNPWRALRGCFPKNNGGMILVTTRNHRVANALESKIPLLTVTPMDEEESWQLFRNEVFYSTMCPPELEGIGRSIAENCNGLPLLIKTTAGIVAKRERLVEEWEEIKKLLPYWSIAEDNDGKEMMKRLKLSYDDLSEKMKPCFLYLGAFPEDSVIRVRELICMWMAEEFIKPTIQTGRSAIEPEDIGEQYLKELVDRNLVQVVKRRSDGKGIKSVKIHDIIRELCISESNSNKACLVTPPDQSSTFSLLVHGHVFGKTPLIPDNCQVMNVLYLKRISWSSIIFPEKLKSIRFLQKKDRISDFLEIRDMQSLFSLILQNLQSLCVRSTSREYQISIGEGLKQLRHFRVHSGSYLLEDAEGVIDKMQNLQTLFYVYADSEMGILLGNGYFANLRTLGLMISEDEVQSLEENLRGLDKLSKLCKLKLNFDCSTRVSSLDKIAFPSNLSKITLSQFSYLQDQDMNALGRIPNLKILKFYLVSCTENILRCGSAGSFPQLQVFIQKSVEVTSVTLENRAMSNLQRAVFHLCRGLKYNCLPEQMHCLGRNLRFIPHEDDDDDLQLRDDDLQSRDDDDGIVYMYDSDPDDDPDDDDDDVYLAVTCILKNIY 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc221g00001 1034 Gene3D Ribonuclease Inhibitor 682 961 IPR032675 -
Stsc221g00001 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 576 IPR027417 -
Stsc221g00001 1034 FunFam Probable disease resistance protein At1g63360 562 657 - -
Stsc221g00001 1034 Pfam NB-ARC domain 320 564 IPR002182 GO:0043531
Stsc221g00001 1034 MobiDBLite consensus disorder prediction 990 1004 - -
Stsc221g00001 1034 Pfam TIR domain 2 130 IPR000157 GO:0007165
Stsc221g00001 1034 PRINTS Disease resistance protein signature 509 523 - -
Stsc221g00001 1034 PRINTS Disease resistance protein signature 415 429 - -
Stsc221g00001 1034 PRINTS Disease resistance protein signature 339 354 - -
Stsc221g00001 1034 PRINTS Disease resistance protein signature 736 752 - -
Stsc221g00001 1034 SMART till_3 2 101 IPR000157 GO:0007165
Stsc221g00001 1034 PANTHER DISEASE RESISTANCE PROTEIN RP 317 928 IPR044974 GO:0006952
Stsc221g00001 1034 Gene3D - 304 469 IPR027417 -
Stsc221g00001 1034 Gene3D - 131 293 IPR027417 -
Stsc221g00001 1034 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 102 IPR035897 -
Stsc221g00001 1034 FunFam Probable disease resistance protein At1g61300 301 466 - -
Stsc221g00001 1034 Gene3D - 567 656 IPR036388 -
Stsc221g00001 1034 Gene3D - 1 130 IPR035897 -
Stsc221g00001 1034 Gene3D - 475 566 IPR042197 -
Stsc221g00001 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 291 IPR027417 -
Stsc221g00001 1034 Coils Coil 826 846 - -
Stsc221g00001 1034 ProSiteProfiles TIR domain profile. 1 128 IPR000157 GO:0007165
Stsc221g00001 1034 SUPERFAMILY L domain-like 642 959 - -
Stsc221g00001 1034 MobiDBLite consensus disorder prediction 990 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc221g00001 Stsc-Chr221 3357 7572 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc221g00001 10 292 WRKY Transcription Factor Family AT4G12020 26.531 4.05e-17 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc221g00001 - - aip:110271380 891.723