Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc220g00008 ATGAAAATTGGTGACATGGAAGGCGATGAAGCCGAGCAAATCCATTCTGGAGTACCTTATGTTACCTTACCACACTATCTGCACTATCCTTCCCCAAACCAGAAACCAATGTTGCCCTCAAGCTTCTTGAACATGGAAATTGGAGAAGGCCATCATGCTTTGAACCATTTGGATCCCTCTCATGGTTTACATCATCTTCCTTTGAGCTACTCCCAACTTCACCTTCCTGGTAATAATAGCAACAATCCAATTCATACCCCGGTTCATAAGTCCTCCCCAAACACATCATCCAACAGCAACCACAATTCTGATGAAGCAAAGGCTATCCTTGATGACAGAAAGAAAAAGAGGATGTTCTCCAACAGGGAGTCGGCTCGCAGGTCGCGGATGCGAAAGAAGCAACAGATCGAGGTCCTTCAGTACCATGTTGACCATCTGCAGACTTTGAACCATCAACTGTCACAAAAAATCATTTACTTGTTGGAATGTAATCAACAAATCAACCAGCAGAATGCTCAGCTTAAAGAGAAGGTTTCTTCTCTTCAAGTAGCCCTCTCTGACCTGTTAATTCCTGTCGGACATGCTACTGAGCAACCTCAACACATCCCTGGTGGCTTCCTATCCGAGCCTTCGACTCGAACAATTGCTAGCTCTGGAGCATAA 663 0.448 MKIGDMEGDEAEQIHSGVPYVTLPHYLHYPSPNQKPMLPSSFLNMEIGEGHHALNHLDPSHGLHHLPLSYSQLHLPGNNSNNPIHTPVHKSSPNTSSNSNHNSDEAKAILDDRKKKRMFSNRESARRSRMRKKQQIEVLQYHVDHLQTLNHQLSQKIIYLLECNQQINQQNAQLKEKVSSLQVALSDLLIPVGHATEQPQHIPGGFLSEPSTRTIASSGA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc220g00008 220 MobiDBLite consensus disorder prediction 105 131 - -
Stsc220g00008 220 SMART brlzneu 109 173 IPR004827 GO:0003700|GO:0006355
Stsc220g00008 220 CDD bZIP_plant_GBF1 114 162 IPR045314 GO:0003700|GO:0006355
Stsc220g00008 220 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 116 131 IPR004827 GO:0003700|GO:0006355
Stsc220g00008 220 SUPERFAMILY Leucine zipper domain 113 164 IPR046347 GO:0003700|GO:0006355
Stsc220g00008 220 Coils Coil 164 184 - -
Stsc220g00008 220 Gene3D - 112 166 - -
Stsc220g00008 220 FunFam BZIP transcription factor 111 162 - -
Stsc220g00008 220 Pfam bZIP transcription factor 113 171 IPR004827 GO:0003700|GO:0006355
Stsc220g00008 220 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 29 196 IPR044521 -
Stsc220g00008 220 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 111 174 IPR004827 GO:0003700|GO:0006355
Stsc220g00008 220 MobiDBLite consensus disorder prediction 74 131 - -
Stsc220g00008 220 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc220g00008 Stsc-Chr220 64405 65231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc220g00008 111 213 bZIP Transcription Factor Family AT5G60830 53.846 1.06e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc220g00008 bZIP_1 2.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc220g00008 - - ahf:112721804 390.963