Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc220g00007 ATGCTCACCGTCGAAGACGATAGATCCGCCTCGGTTTCCGTTTCACACGTCACCGGAATCGAAGAAGAAGAAGTTAACGTTTTTAGGGTTGGGGGATTGGAGAATTTGGAATGGGAAGTGTTGCTGAATGCAAACAATTTGGACACAATCACGAGCCCGGATTTGGATCATGATTCCGAACCTTACTTTGGTGATCACGATGATTATATTAACACTGCAGAGTATGAAATGATGTTTGGCCAATTCGTTGATAATGATAATCCGTTGAACGGTAGGCCTCCGGCTTCGGCTTCCGTCGTCCGGAGCCTGCCGTCGGTGGTGGTAACGAAGGATGACGTGGAAGGAAACAATGCACTTTGTGCTGTTTGCAAGGATGAGTTTTGTGTTGGGGAGAATGTAAAGGTGTTGCCTTGTTCCCATCGTTATCATGGTGACTGCATTCTGCCGTGGTTGGGGATTCGGAACACTTGCCCCGTCTGCCGCCATGAGTTCCCCACTGATGATGCTGATTATGAGCGTAGGAGGTTGCATAGATCTGGCCAGAGGATTTGA 552 0.4837 MLTVEDDRSASVSVSHVTGIEEEEVNVFRVGGLENLEWEVLLNANNLDTITSPDLDHDSEPYFGDHDDYINTAEYEMMFGQFVDNDNPLNGRPPASASVVRSLPSVVVTKDDVEGNNALCAVCKDEFCVGENVKVLPCSHRYHGDCILPWLGIRNTCPVCRHEFPTDDADYERRRLHRSGQRI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc220g00007 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 61 165 - -
Stsc220g00007 183 Pfam Ring finger domain 120 161 IPR001841 -
Stsc220g00007 183 SUPERFAMILY RING/U-box 102 167 - -
Stsc220g00007 183 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Stsc220g00007 183 SMART ring_2 120 160 IPR001841 -
Stsc220g00007 183 FunFam E3 ubiquitin-protein ligase RING1-like 81 167 - -
Stsc220g00007 183 CDD RING-H2_PA-TM-RING 120 161 - -
Stsc220g00007 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 167 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc220g00007 Stsc-Chr220 61970 62521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc220g00007 38 175 C3H Transcription Factor Family AT5G15820 50.000 1.36e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc220g00007 - - pcin:129307991 288.885