Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc220g00005 ATGTCAGGTGGAAGCAGCAGCGGCGGCGGCGGCGGTGGAGGCTCAGAGTCCTCCCCAAACAAACGCCTGAAAACCGAAGAAGCATCGAAGAAGGTGGACGGTGGCGGAGACGACGAAAGCCAGGGTGTTTCGTGCGGGATCTGCTACGCGGAGCGCGGCGCATCGATCGCCGGAGAAATTGACTGCTGCAGCCACCACTTCTGCTTCGCATGCATCATGGAGTGGTCCAAGCACGAGTCCCGATGCCCTATCTGCCGCCAGAGATTCTCCAACGTTCGCCGCCTCCCCAAGCTTGGCGTCTTCTCTTCTTCTCGTGACATTAAGATCCCTCTCCGTGATCAGGTTTATCATCCTTATGGGAATATGAGCACTGGTTCTACTCATTCTCATACTGAGGCCAAATGCATTGTCTGTCACGGTGTGGAAGATGAAAATCTTGTGTTAATTTGTGATCTTTGTGATGCTTCTTCTCATACATACTGTGTTGGCCTCGGCTACACTGTCCCCGAAGGCGATTGGTTTTGTTATGACTGTGCTATTGCCAGGGAGACCAATCAACAGGAACACTTAGAGCACCACAACGTCCACCAAAGTGGGCCGACAACTGCAATACCCTCTCCTTTACAACAATGTCCGTTCCCTCCTCCTCCTCCTATTATTCCCTCAGCTGATAGATTAAGTAGATACAGGGGGAAGAGGCCTCTGTCGAATGCCCAGCAGGTGCAGCGTAATATTCAAGCGCTCCGTGATAATTGGAATGCACTGAGAAGTGGTTCCATGACGTTTGGTTCTGGTTCCGTTCGAACCAGTCGTAATCAAGATTCTGGTTCTGCTTCACGTGGCAGACGAGTCGAACAACATTCTAATTCCATGGGTTTGGCAAGCCGAGGTTCCAGTTCCAGTAACATTTCAGATGAACAGCATTCTAATTCTATGGCTTTGGCAAGCGGAGGTTATGGTTCCCTTGTGCATGGCGGATCAGACAGACAGCATTCTAATTCTATGGCCTTGCCAAACCGAGGTTCTGGTTCCATTGTGCACGGCAGATCAGACATGGCTTCCCCAAGAATTGAGCACTCGAATGTCCAAGATGGTACATCTAGAGGCACAGTGAATGAGAGGGGCATGAAAGATGTCAATAAGGCTTGGAAAATGATGGAGAAGGCAAAGAAGATGCAAGGGACTCGTCAAAGAACCAGCAGAAAGTAG 1209 0.5045 MSGGSSSGGGGGGGSESSPNKRLKTEEASKKVDGGGDDESQGVSCGICYAERGASIAGEIDCCSHHFCFACIMEWSKHESRCPICRQRFSNVRRLPKLGVFSSSRDIKIPLRDQVYHPYGNMSTGSTHSHTEAKCIVCHGVEDENLVLICDLCDASSHTYCVGLGYTVPEGDWFCYDCAIARETNQQEHLEHHNVHQSGPTTAIPSPLQQCPFPPPPPIIPSADRLSRYRGKRPLSNAQQVQRNIQALRDNWNALRSGSMTFGSGSVRTSRNQDSGSASRGRRVEQHSNSMGLASRGSSSSNISDEQHSNSMALASGGYGSLVHGGSDRQHSNSMALPNRGSGSIVHGRSDMASPRIEHSNVQDGTSRGTVNERGMKDVNKAWKMMEKAKKMQGTRQRTSRK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc220g00005 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 105 IPR013083 -
Stsc220g00005 402 MobiDBLite consensus disorder prediction 259 377 - -
Stsc220g00005 402 SMART PHD_3 134 179 IPR001965 -
Stsc220g00005 402 PANTHER F18C1.6 PROTEIN 32 396 - -
Stsc220g00005 402 MobiDBLite consensus disorder prediction 356 370 - -
Stsc220g00005 402 ProSiteProfiles Zinc finger RING-type profile. 45 86 IPR001841 -
Stsc220g00005 402 MobiDBLite consensus disorder prediction 259 316 - -
Stsc220g00005 402 SUPERFAMILY RING/U-box 39 98 - -
Stsc220g00005 402 MobiDBLite consensus disorder prediction 20 37 - -
Stsc220g00005 402 Pfam Ring finger domain 44 86 IPR001841 -
Stsc220g00005 402 SMART ring_2 45 85 IPR001841 -
Stsc220g00005 402 Pfam PHD-finger 135 179 IPR019787 -
Stsc220g00005 402 MobiDBLite consensus disorder prediction 326 340 - -
Stsc220g00005 402 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Stsc220g00005 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 203 IPR013083 -
Stsc220g00005 402 SUPERFAMILY FYVE/PHD zinc finger 126 180 IPR011011 -
Stsc220g00005 402 ProSiteProfiles Zinc finger PHD-type profile. 132 181 IPR019787 -
Stsc220g00005 402 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc220g00005 Stsc-Chr220 50540 52285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc220g00005 76 195 C2H2 Transcription Factor Family AT3G01460 30.579 5.98e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc220g00005 PHD 3.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc220g00005 - - ahf:112709160 602.823