Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc220g00003 ATGATGGAGCTTCCTCAAGCGCGGTCATTCGGAACAGAAGGAAGAAAACCTACGCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGACCACCTTCTCAAGGAAGCTACCTTAAGACCCATGATTTCTTGCGAGTAGAAACAAAAGCCAATACAAAGGAAGAAGCCTCGGATGAAATATCATCGACGGTTCAAAAGCTACCACCTGCAGCACCACAACAACCGCCACCTTCTGTAGAGCACCAGCACCTCTTACCTGGAGGGATTGGGACTTACAGTATTAGCCACATTTCTTATTTTAATAATAATAATAATAATAATCAAAGAGTTCCAAAGCCAGAGGCACCCCTTTTCACTGTGCGTCAAGCAACTAGCACGGATAGAAATGATGAAAACTCCAACTGCAGTTCTTATACGTCAAGTGGTTTCACTTTATGGGATGAGTCTGCGGTTAAGAAGGGAAAGACAGGGAAGGAGAATAATACTGTGGGCGACAAGCTCATTCCAGGAGATGCACAGTCTGCGAAGCAAGGCCATTGGACTTCCACGGAGGGAACGCCACAGTCATTTTCTAACAATCGTCACAACAGCAGCTTCAACTCTCGCTCTTCCTCTCAGACAACGGGACAGAAGAACCAGAGTTTCATAGAAATGATGAAATCCGCAAAAGATTGTGCCCAGGATGAAGAGCTAGACAATGAAGAATCATTTTTCCTTAAGAAAGAATGCTCGAATCCTGAAAGAGAACTAAGGGTAAAAGTTGATGGAAAGAGTACTGATCAAAAGCCAAACACACCAAGGTCAAAACATTCTGCAACAGAACAGCGGAGGAGGAGCAAAATTAATGACAGATTCCAGATGCTAAGAGAGCTAATTCCACACAGTGACCAAAAGAGAGACAAAGCATCTTTTTTGCTAGAGGTCATTGAGTATATTAATTTCTTGCAAGAGAAGGTCCATAAGTATGAAGGTTCATTCCAAGGGTGGAACCACGATACAGAAAAACTGATGCCATGGAGGAACAATGACAAGCCAGCAGAGAGTTTTGAAGCTCGTGGCACAAATAGTGGGTCAGGTCCATCTCCAACATTGCTCTTTGCTTCAAAGATTGATGAGAAAAATATCACTCTCTCCCCACCAATTACTGGATGTTCTCAGAAAGTAGAACCTGGGTTGAACACAGTAACTACCTTCAAAAACATGGATCATCCTCCTGGAATAACAAACAACACTTTCCCCATTCCTATTACTTCACCACCAAACTTCTTTCCTCCTAGGAAAACCATTGGTCTAGGCGAAATGCCTCATGTCACACATAGACTGCCGTCTGATGCAGGGAATGGCATATATCAACCTTCAATGGAGTGTCAGACAGTCACTGCTACTAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTATACTCAAAAGGGTTGTTGGATACACTTACACATGCACTACAGAGTTCGGGAGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAACATTATCAGACCAACTCTGCCAATGTCAATGTGTGGTGTTAAGGATGATGAAGTTCCTTCTAACAATCAAAGGATGATGCGCTCTAGAGTTGCTTCCTCTGAGAAATCTGACCAGCCAGTAAAGAAGCTAAAGACTTGCAAAACCTAA 1719 0.4299 MMELPQARSFGTEGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLRVETKANTKEEASDEISSTVQKLPPAAPQQPPPSVEHQHLLPGGIGTYSISHISYFNNNNNNNQRVPKPEAPLFTVRQATSTDRNDENSNCSSYTSSGFTLWDESAVKKGKTGKENNTVGDKLIPGDAQSAKQGHWTSTEGTPQSFSNNRHNSSFNSRSSSQTTGQKNQSFIEMMKSAKDCAQDEELDNEESFFLKKECSNPERELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYINFLQEKVHKYEGSFQGWNHDTEKLMPWRNNDKPAESFEARGTNSGSGPSPTLLFASKIDEKNITLSPPITGCSQKVEPGLNTVTTFKNMDHPPGITNNTFPIPITSPPNFFPPRKTIGLGEMPHVTHRLPSDAGNGIYQPSMECQTVTATNEKLKEKELTIEGGAISISSVYSKGLLDTLTHALQSSGVDLSQASISVQIELGKQANIIRPTLPMSMCGVKDDEVPSNNQRMMRSRVASSEKSDQPVKKLKTCKT 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc220g00003 572 FunFam BHLH domain class transcription factor 268 340 - -
Stsc220g00003 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 336 IPR036638 GO:0046983
Stsc220g00003 572 Gene3D - 268 342 IPR036638 GO:0046983
Stsc220g00003 572 MobiDBLite consensus disorder prediction 253 286 - -
Stsc220g00003 572 MobiDBLite consensus disorder prediction 158 216 - -
Stsc220g00003 572 MobiDBLite consensus disorder prediction 21 39 - -
Stsc220g00003 572 CDD bHLH_AtBIM_like 269 345 - -
Stsc220g00003 572 MobiDBLite consensus disorder prediction 554 572 - -
Stsc220g00003 572 MobiDBLite consensus disorder prediction 1 85 - -
Stsc220g00003 572 MobiDBLite consensus disorder prediction 180 216 - -
Stsc220g00003 572 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 569 IPR044295 GO:0003700|GO:0006351|GO:0046983
Stsc220g00003 572 MobiDBLite consensus disorder prediction 540 572 - -
Stsc220g00003 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 320 IPR011598 GO:0046983
Stsc220g00003 572 MobiDBLite consensus disorder prediction 47 65 - -
Stsc220g00003 572 SMART finulus 276 326 IPR011598 GO:0046983
Stsc220g00003 572 Pfam Helix-loop-helix DNA-binding domain 272 321 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc220g00003 Stsc-Chr220 27988 35182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc220g00003 2 569 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 45.918 3.93e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc220g00003 HLH 6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc220g00003 - - adu:107468970 1038.48