Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc220538g00001 ATGGGTAAGGAGAAGACTCACATCAACATTGTGGTCATTGGCCACGTCGACTCTGGAAAGTCGACCACCACTGGTCACTTGATCTACAAGTTGGGAGGTATTGACAAGCGTGTCATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCCTTCAAGTACGCCTGGGTGCTTGACAAGCTCAAGGCCGAGCGTGAAAGAGGTATCACCATCGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCCGGACACAGAGATTTCATCAAGAACATGATTACTGGAACTTCCCAGGCTGACTGTGCTGTTCTCATCATCGATTCCACCACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACCCGTGAGCACGCTCTCCTTGCTTTCACCCTTGGTGTCAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCCACCACACCCAAGTACTCCAAGGCCCGTTATGATGAAATCGTGAAGGAAGTCTCATCCTACTTGAAGAAGGTCGGATACAACCCAGACAAAA 562 0.4893 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc220538g00001 187 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 187 IPR000795 GO:0003924|GO:0005525
Stsc220538g00001 187 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Stsc220538g00001 187 PANTHER TRANSLATION FACTOR 4 186 - -
Stsc220538g00001 187 FunFam Elongation factor 1-alpha 1 187 - -
Stsc220538g00001 187 Pfam Elongation factor Tu GTP binding domain 5 179 IPR000795 GO:0003924|GO:0005525
Stsc220538g00001 187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 186 IPR027417 -
Stsc220538g00001 187 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Stsc220538g00001 187 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Stsc220538g00001 187 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Stsc220538g00001 187 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Stsc220538g00001 187 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Stsc220538g00001 187 CDD EF1_alpha 9 187 - -
Stsc220538g00001 187 Gene3D - 1 187 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc220538g00001 Stsc-Chr220538 2 651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc220538g00001 1 187 Eukaryotic Initiation Factors Gene Family AT1G07930 98.930 2.66e-137 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc220538g00001 K03231 - twl:119991131 382.874