Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc21g00023 ATGGGAAGTGGAGTCTCTACCTTGTGTTCATGCCTCGAACCGCCGGCGCCAAACCAACCGGACCTCAACGGCGACGTCATCTTCGCTGCCACCGAACCGCTCGACGAAACCCTCGGCCATTCCTTCTGCTACGTAAGATCCTCCAACCGGTTCCTCTCTCCAACGCACTCCGATCGCTTCGTTTCCCCCTCTGCCTCACTCCGTTTCTCTCCAACGCACGACCCGGTTCACAGAACCCGACCCGAACCACCCGAAACTGCATTCAAGGCTATTTCGGGAGCCTCTGTTAGTGCTAACAGCTCCGTTCCCAAGACAGTTATTCAGTTAGAAGAAGAGGCCACCGACTGTACCGGTAACAGAGCAGCTGGATTATTAGGAGGAGGGACCGTTGTCAACGGTTTCGAGAGTACGTCGTCGTTTAGCGCGCTACCGCTGCAGCCGGTTCCCCGCGGTGGAGAGCCTTCTGGAACATTCGACAGGGGAGGAGGGTTCTTCCTCTCTGTACCAATTGAGAGCGGTGCCGGTGCGCTCTCCGGGCCGCTTAATTCCGGCCCCGCCGCCACCTCCGCTGGGCTCCCGTTCTCGGCGCCGTTGGGAGGGGTGTACGTGAAGAAGAAGAAGAGGAAGAATGGCGTGTCCGGGTTCAGGAAGGCGTTTCAGAGAATCGTGCCGGAGAAGAAGCGGCCGTGGGTGGTGCCGGTGCTGAACTTCGTCGGAAGGAAGGAAGTTCAGGGTTGCGAGGGGAGAGAGGAGGCGGCGAGAGAGGAGAGCAATGTGCAGTGGGCACTGGGGAAGGCCGGCGAGGACAGGGTGCACGTGGTGGTGTCGGAGGAGCAGGGTTGGCTGTTCGTCGGGATTTACGACGGTTTCAACGGCCCCGACGCGCCGGAGTTCCTGATGGGACATCTGTACCGTGCCGTCCATAACGAGCTTCAGGGTCTATTCTGGGAAGATGAAGAAGCAGAGGGCAGAAACGACAATTCAAGTGTTCCCGCTGCTGAGGTAAAGAACACCGAGCGAGATGGCAGTGAAGACTCTCACTCTCACTCTGTAACCGCGGCTGTTAAGAAGGTAACGTTTCAGGTGGAGGGAACGGAAAGCAGGAGGCGTAGGCTATGGGAATTTCTTGCTGAGGACCCCGAAGACGGCCTTGATCTTTCTGGCTCCGATCGGTTTGCGTTTTCCGTGGATGATGCTCTCAGTGTTAGCAATGCCAATGCTGGCTCCGCTGTTAGCAGAAGGTGGCTGCTGTTGTCGAAATTGAAGCATGGTTTGTCTAAGCATAAAGAGGGTCAAGGTAGGAAGCTGCTCCCGTGGAGCTTTGGTGCGGAAGGGAAGGATGAGAAGGTGGAAACAGAGGCAGGGACTGAGGACAAGTTTTCTTCTGGTGGCGGAGGCCGGAGGAGGCGGAAGGTTGGACCCGTGGACCATGATCTTGTTTTGAGGGCATTGTCTCGTGCGCTTGAGGTGACCGAGCTGGCATATTTAGATATGACGGAGAAGCTTCTGGATACAAATCCAGAGCTTGCTTTGATGGGTTCTTGTTTGTTGGTTGCTTTGATGAGGGATGAGGATGTGTATGTCATGAACGTTGGGGATAGCCGTGCCATTGTTGCTCATTATGATGAGCCCAAAGACCGTCCCCCTGCTAGCACAGGATCCAGTGTCAAGAAGGGTAATGCTGTCTCGAGCGCGGAGAGTATTGTTGAGGAGTCCTCGACAGTAGCGGCTGGAGAAAGCGCAGGCAAGTTGGAGAATGAGGATCCTGCTCTGGAAATGAAGTTGGTGGCATTGCAGCTGTCCACTGACCACAGCACTTCCATTGAAGAAGAAGTCAATAGAATAAAAAATGAGCACCCCGATGATGGCCAATGCATAGTCAATGATCGAGTAAAAGGTCGTCTCAAGGTCACCAGAGCATTTGGGGCAGGATTTTTGAAACAGCCAAAGTTGAACGATGCAGTGTTAGAAATGTTTCGCAACGAGTTTATTGGCACTGCTCCATATATATCTTGCTCTCCTTCGCTACGTCACCATAGATTATGCCCAAGAGATCAGTTCTTGATTCTCTCATCTGATGGGTTATATCAATATCTAAACAATGAAGAAGTTGTTTCTCAAGTGGAGAGCTTCATGGAAAAGTTTCCAGAAGGAGATCCTGCCCAACATTTAATTGAAGAGCTGCTTCTCCGTGCAGCAAAGAAGGCTGGCATGGGTTTTCATGAGTTGCTTGATATCCCACATGGAGATAGGAGGAAGTACCATGATGATGTCACCGTCATGGTGATATCACTTGAAGGAAGAATCTGGAAATCCTCAGGCAAGTATCTGTGA 2334 0.5304 MGSGVSTLCSCLEPPAPNQPDLNGDVIFAATEPLDETLGHSFCYVRSSNRFLSPTHSDRFVSPSASLRFSPTHDPVHRTRPEPPETAFKAISGASVSANSSVPKTVIQLEEEATDCTGNRAAGLLGGGTVVNGFESTSSFSALPLQPVPRGGEPSGTFDRGGGFFLSVPIESGAGALSGPLNSGPAATSAGLPFSAPLGGVYVKKKKRKNGVSGFRKAFQRIVPEKKRPWVVPVLNFVGRKEVQGCEGREEAAREESNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGHLYRAVHNELQGLFWEDEEAEGRNDNSSVPAAEVKNTERDGSEDSHSHSVTAAVKKVTFQVEGTESRRRRLWEFLAEDPEDGLDLSGSDRFAFSVDDALSVSNANAGSAVSRRWLLLSKLKHGLSKHKEGQGRKLLPWSFGAEGKDEKVETEAGTEDKFSSGGGGRRRRKVGPVDHDLVLRALSRALEVTELAYLDMTEKLLDTNPELALMGSCLLVALMRDEDVYVMNVGDSRAIVAHYDEPKDRPPASTGSSVKKGNAVSSAESIVEESSTVAAGESAGKLENEDPALEMKLVALQLSTDHSTSIEEEVNRIKNEHPDDGQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDAVLEMFRNEFIGTAPYISCSPSLRHHRLCPRDQFLILSSDGLYQYLNNEEVVSQVESFMEKFPEGDPAQHLIEELLLRAAKKAGMGFHELLDIPHGDRRKYHDDVTVMVISLEGRIWKSSGKYL 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc21g00023 777 SMART PP2C_4 250 763 IPR001932 -
Stsc21g00023 777 MobiDBLite consensus disorder prediction 542 584 - -
Stsc21g00023 777 Gene3D - 240 772 IPR036457 -
Stsc21g00023 777 ProSiteProfiles PPM-type phosphatase domain profile. 252 765 IPR001932 -
Stsc21g00023 777 MobiDBLite consensus disorder prediction 320 351 - -
Stsc21g00023 777 CDD PP2Cc 476 765 IPR001932 -
Stsc21g00023 777 MobiDBLite consensus disorder prediction 337 351 - -
Stsc21g00023 777 PANTHER PROTEIN PHOSPHATASE 2C 251 764 IPR015655 GO:0004722|GO:0006470
Stsc21g00023 777 Pfam Protein phosphatase 2C 485 729 IPR001932 -
Stsc21g00023 777 MobiDBLite consensus disorder prediction 447 472 - -
Stsc21g00023 777 SUPERFAMILY PP2C-like 265 766 IPR036457 -
Stsc21g00023 777 MobiDBLite consensus disorder prediction 64 85 - -
Stsc21g00023 777 MobiDBLite consensus disorder prediction 553 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc21g00023 Stsc-Chr21 195319 200353 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc21g00023 1 777 PP2C-type Phosphatase Gene Family AT2G35350 56.827 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc21g00023 - - mtr:11415473 1034.63