Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc21g00019 ATGGGAGGGGCAACACTGCCACCTGGATTTCGTTTTCACCCAACAGATGAAGAATTATTGGGATATTACCTAAAAAGAAAAGTGGAAGGCCTTGAAATTGAGCTTGAGGTTATCCCTGTCATTGATTTTTACAAGTTTGATCCTTGGGAGTTGCCTGAGAAATCATTTTTGGCAAACAGAGACAGAGAATGGTTCTTCTATTGTCCAAGGGACAGGAAGTACCCAAATGGATCAAGAACAAACAGAGCCACCAAATGTGGTTATTGGAAAGCCACTGGAAAAGACAAGAAAATTGTGTGCCAATTTGATACTCCTTCCACTGTCACTGGATATAGAAAGACCCTGGTTTTCTACCGTGGCAGAGCCACTTTGGGTGATAGAACTGATTGGGTCATGCATGAGTATCGCCTCGCCGACGATCTCGGCGTACCGTCTTCATGTTTTCAGGGTGGTTATGCCTTGTGCCGGGTTTTTAAGAAGAACGAAAAGGTGAATGATTTGCAAGGGATCAATGGGAACGATGAGTCAATGAGAATCTCAAATGAGCCCTTAACCATTTCTGCTGATGCTTCATCCTCTCAAGCAATCCATTTGAACAGTGAGAGTGTTTATTCAAGCCCCATTGCTTCTCCACACAATGTGGTTCCAATGGCAGACTCTAACCAACCTTCTATAAACACCAATTCTTCAGCAGAACTTTGGGTGTCCCCTGATCTGATTCTTGATTCTTCAAAGGACTATCCTCAAGTACAAAATAGTTTTACAAGGTGTGACATACCAAGTAGTACAATGACACCATGGGAGTCATTGGATCAAACAGAAATTTCCACTAGTTCATCGTACTCAAATTTTAATCGGCAAATCGAATTTTCCGAAGATTTTAACATGATTGACGACATGTCACATTACTCGATGCAGGAAGATTTTACGTACTTTTATGAAAATGGAAGTTATGATCATATTAATTCAGTTGAATATCCAGAATACTTTTAG 993 0.4079 MGGATLPPGFRFHPTDEELLGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLANRDREWFFYCPRDRKYPNGSRTNRATKCGYWKATGKDKKIVCQFDTPSTVTGYRKTLVFYRGRATLGDRTDWVMHEYRLADDLGVPSSCFQGGYALCRVFKKNEKVNDLQGINGNDESMRISNEPLTISADASSSQAIHLNSESVYSSPIASPHNVVPMADSNQPSINTNSSAELWVSPDLILDSSKDYPQVQNSFTRCDIPSSTMTPWESLDQTEISTSSSYSNFNRQIEFSEDFNMIDDMSHYSMQEDFTYFYENGSYDHINSVEYPEYF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc21g00019 330 Pfam No apical meristem (NAM) protein 7 137 IPR003441 GO:0003677|GO:0006355
Stsc21g00019 330 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Stsc21g00019 330 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 244 - -
Stsc21g00019 330 FunFam Nac domain-containing protein 86 15 163 - -
Stsc21g00019 330 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Stsc21g00019 330 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc21g00019 Stsc-Chr21 140382 142863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc21g00019 1 322 NAC Transcription Factor Family AT4G17980 50.915 1.26e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc21g00019 NAM 9.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc21g00019 - - aip:107605232 499.59