Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc21g00009 ATGGGTTGCACGGTGAGGGAAAAGCACATCAGAGCGAATCGGAGACCCCGATCATCATCGAAACCCGATTCTGATTCGTGCGACAGAGACCCGATTTCCAAATCCATAGCTGAGTCTGGCCTCAAGCCCTTCAAGTATCACCACCATGTGGCTCCCAACAACAGCAAAAACGACCCTTCTTCTACCCAGAACACGAACCCTAACTCCGATGAAACGGGTTGGGGTTACTGCACCGAGGAACAGTTGGAGGAGATCCTCTTGAAGAACCTCGAGTTTATTTATAACGAAGCGGTCTCCAAGCTCGTGGCTTTGGGTTACGATGAGGACGTTGCGGTCAGAGCTATTTTGAAGAACGGCCATTGCTACGGTGGAATGGATGTTCTCACCAACATACTGCATAATTCGTTAGCCTTCTTGAATAGTAATATCAACAACAACAATAATAATAATGGTGGTTCTGGAAATGGTGGATGTTTGAATGAGAGTGAGGCTGCTTTCTCTGATTTGAGGCATCTGGAGGAGTATTCTCTTGCTGGTATGGTGTGTTTGTTGCAACAGGTGAGGCCTCATTTGAGCAAAGGTGATGCAATGTGGTGTTTGCTGATGAGTGATCTTCATGTTGGTAGGGCCAGTACTATGGAGATTCCAGTCCCGGGAAGTGGGTACCCGTGTACCGCGACTGTGGCTGCTGCTGTTGAGGGTGGTGGCAATTCGGTAGTAGGTGATGATGGTGGCAATTCGGCGGTTGGTGGTGGTGGTGGTGGGGGTGTTATGGCTCCTGCATTGTGTAGGTTTCATGGTGGTTGGGGATTTGGGAATGGGGCAGGCTCAGGGTTTCAGGCGAATGGGTTGTTCTCTTATGGTGCTGCTGAGATGAATTTGCAGCTGCAAAGGGATATTGAGTTCCCTAAGAGGTTTAACCTTTCGCCTTCGATGAAGTCGTTGTTGAAGAGGAATGTGGCTGCGTTTGCTGCTGGTTTTAGGGCAAATTCAAAGCAATTGCAGACTCAGACTCAGGCTCAGTTGAAGGCCTTTTCCGGTAGTGGTGCTGTGTCAAAGTTGGATTCTCCGGAAGCACTGGTTGAGCAGCCTGGACGGGCTGGAGAGTCTCAGAATGTTGATAGCCAAGATGCTGTGAACTCGGTGCTGAGTAAGTTCCGTGATCTAAATCTTGATGAGAATTTGGAGCTTGTGGCAGAGGATCAGAAGGATGAGGTGATAGTCACTTTGTTTCATCAGATCAAGGATCTTGAGAAACAGGTTAAGGAGCGAAAAGATTGGGCTCATCAGAAGGCAATGCAAGCTGCGAGAAAGCTAAGCAGTGATCTTACTGAGCTCAAGATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGAAAACAGGCACTCGAGGACACCACCATGAAGAGGCTCTCAGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCGAATGCGGCCGTGAGGAGACTAGAGACAGAGAATGCGGAAATCAAAGCAGAGATGGAGGCTTCCAAGTTAAGTGCATCAGAGTCGGTGACAGCTTGCTTAGAGGAGATTGCTGATGAAAAAGCAAAGATATCGGAGACACAAGAAGTATTGGCTCAGATTAGACAGAGCCAAAAAGATGCCGAGGTTAAGTGGAAGGAAGAGGTGAAAGCCAAAGAGGAAGCCTTAGCGCTAATCGAAGAGGAGCGCCATTCTAAGGAAGCAGCTGAATCCAACAATAAAAGGAAGCTCGAGGCATTACGCCTGAAGATTGAGATAGATTTCCAGCGCCACAAGGACGATCTACTCCGACTTGAGCAAGAGCTCTCACGGCTTAAGGCGTCTGCACAGTCCGCTGAGCTGCATCATCAGTCAAATGCTGCTTCACCTGTTGGTGGCGAGTCTGAGGGCACAATGCCCCAGAGAGATACAATTGCCAAGCTACTCCAAGAACTAGATAATCTAGAGGATTATTCGGAGAAGGAAGTGAATGGCAACAGAGAATGCATTATATGCATGAAAGATGAAGTTTCCATTGTTTTCTTGCCGTGTGCGCACCAAGTTATGTGTGCTGGTTGTGGCGATGAGTATGGAAGAAAGGGAAAAGCTGCTTGTCCTTGCTGCAGGGTTCCGATCCAACAGCGAATCCGTGTGTTTGGCGCAAGCTCATAG 2181 0.4842 MGCTVREKHIRANRRPRSSSKPDSDSCDRDPISKSIAESGLKPFKYHHHVAPNNSKNDPSSTQNTNPNSDETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVRAILKNGHCYGGMDVLTNILHNSLAFLNSNINNNNNNNGGSGNGGCLNESEAAFSDLRHLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVPGSGYPCTATVAAAVEGGGNSVVGDDGGNSAVGGGGGGGVMAPALCRFHGGWGFGNGAGSGFQANGLFSYGAAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAAFAAGFRANSKQLQTQTQAQLKAFSGSGAVSKLDSPEALVEQPGRAGESQNVDSQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVKERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEEIADEKAKISETQEVLAQIRQSQKDAEVKWKEEVKAKEEALALIEEERHSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSNAASPVGGESEGTMPQRDTIAKLLQELDNLEDYSEKEVNGNRECIICMKDEVSIVFLPCAHQVMCAGCGDEYGRKGKAACPCCRVPIQQRIRVFGASS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc21g00009 726 MobiDBLite consensus disorder prediction 619 642 - -
Stsc21g00009 726 MobiDBLite consensus disorder prediction 53 74 - -
Stsc21g00009 726 Coils Coil 552 589 - -
Stsc21g00009 726 MobiDBLite consensus disorder prediction 1 34 - -
Stsc21g00009 726 MobiDBLite consensus disorder prediction 619 635 - -
Stsc21g00009 726 PANTHER OS05G0141500 PROTEIN 1 525 IPR046934 -
Stsc21g00009 726 MobiDBLite consensus disorder prediction 47 74 - -
Stsc21g00009 726 Pfam Zinc finger, C3HC4 type (RING finger) 669 717 - -
Stsc21g00009 726 CDD RING-HC_MIP1-like 670 721 - -
Stsc21g00009 726 SUPERFAMILY RING/U-box 653 718 - -
Stsc21g00009 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 723 IPR013083 -
Stsc21g00009 726 Coils Coil 598 625 - -
Stsc21g00009 726 Pfam Family of unknown function (DUF6592) 89 211 IPR046527 -
Stsc21g00009 726 Coils Coil 527 547 - -
Stsc21g00009 726 MobiDBLite consensus disorder prediction 16 32 - -
Stsc21g00009 726 Coils Coil 474 515 - -
Stsc21g00009 726 ProSiteProfiles Zinc finger RING-type profile. 672 712 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc21g00009 Stsc-Chr21 55143 60574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc21g00009 652 722 C3H Transcription Factor Family AT1G73950 33.333 3.50e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc21g00009 - - adu:107483267 1206.05