Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2187g00003 ATGGTCGATGGGGAATATGTGGTTGAAAAACCTTTTAGGAATTATCATCTTACGCAGTATACAATGAATGTTCCGAGACAACTCCTGGAGGTTGGGTTCACTCATGATCCAAAACATATTATAGTCATTGACAGTTCTTCAAAGATGTATATCGTCCGTGTTAGAAATAAGTCCAAAAAATGGAAAACCATGGTGTTGGGTAGGGGCTGGAAAAAATTTCAAGTTGCTAATGATTTGAGGAAGGGAGACGTTATCAAAATGTGTTTTGATCCAAAATATCTTGATAATCTCCGTTGTGTTGTCCGTAGATCATAG 315 0.3746 MVDGEYVVEKPFRNYHLTQYTMNVPRQLLEVGFTHDPKHIIVIDSSSKMYIVRVRNKSKKWKTMVLGRGWKKFQVANDLRKGDVIKMCFDPKYLDNLRCVVRRS 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2187g00003 104 ProSiteProfiles B3 DNA-binding domain profile. 7 104 IPR003340 GO:0003677
Stsc2187g00003 104 SUPERFAMILY DNA-binding pseudobarrel domain 8 92 IPR015300 -
Stsc2187g00003 104 Gene3D - 3 96 IPR015300 -
Stsc2187g00003 104 CDD B3_DNA 15 92 IPR003340 GO:0003677
Stsc2187g00003 104 Pfam B3 DNA binding domain 13 87 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2187g00003 Stsc-Chr2187 7435 7884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2187g00003 9 87 REM Transcription Factor Family AT2G24650 28.571 5.61e-06 41.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc2187g00003 B3 2.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2187g00003 - - gra:105792694 41.9726